Array 1 253629-251950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESB010000002.1 Salmonella sp. 32082101201600294FB01SM01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 253628 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 253567 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 253506 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 253445 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 253384 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 253323 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 253261 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 253200 29 96.6 32 ............................A TCCCAAACAGTGTCGCCGTAACGCTCGGTGAC 253139 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 253078 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 253017 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 252956 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 252895 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 252834 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 252773 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 252712 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 252651 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 252590 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 252529 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 252468 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 252407 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 252346 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 252285 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 252224 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 252163 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 252102 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 252041 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 251979 29 86.2 0 TAA.........T................ | A [251952] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 270342-269765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESB010000002.1 Salmonella sp. 32082101201600294FB01SM01 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270341 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 270280 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 270219 29 100.0 32 ............................. GCGAGATTAAAGCTGGCTAACTATTTGTGAGA 270158 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 270097 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 270036 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 269975 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 269914 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 269853 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 269792 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //