Array 1 175858-174329 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYS01000010.1 Pectobacterium polaris strain F109 KHDHEBDM_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 175857 28 96.4 32 ...........G................ AGATTGGGGTAAACGGAAAATTGTTGTGGCGG 175797 28 100.0 32 ............................ CACGTCCGTGCGCATGACTTCACCGTTGAAGG 175737 28 100.0 32 ............................ AGCAGATAGACGCGGTGATCAAGGGCCGGAAC 175677 28 100.0 32 ............................ CATCGGTCAGGTGGTGCGAGCTGAATCAGCGA 175617 28 100.0 32 ............................ GTTCATGCAACGCGCAATGCTCGCGTCACGTA 175557 28 100.0 32 ............................ CGTTTTCAGCGAATGCGGCGATCCATTGTTTC 175497 28 100.0 32 ............................ TCGATATGAAAGCCGACAACGAATACCGCATA 175437 28 100.0 32 ............................ ATCACGGTCACGCTGCTGAAAACCTCCCCGGT 175377 28 100.0 32 ............................ AACCAGTCGAGTACAAAGGCGCTGGCATCCTG 175317 28 100.0 32 ............................ TTTACCAGTGGCGTGACCATGACGAATATCAG 175257 28 100.0 32 ............................ GGCTCGATACCACGCCATGACCCCGCGCCCCG 175197 28 100.0 32 ............................ TGGTATTACATGTACCAGAATCAAGAGCAGGC 175137 28 100.0 32 ............................ CCAGCCCTTATGGCCGCGTGCTTAGCATTGAG 175077 28 96.4 32 ...........G................ AGGCAACGCCGGATTAAGCTCAGCGTTGATTT 175017 28 96.4 32 ...........G................ GGAAGACGCCCAGGCCAAATGGGACATGATTC 174957 28 96.4 32 ...........G................ CACAAATCAAAGGTCTCGACTACTGAGGACTA 174897 28 96.4 32 ...........G................ AGTGTGAGCACGACATTCAGAGGAATTCGGGA 174837 28 100.0 32 ............................ AAGACCAATAAGGCGCTGAGCATCTTCAACGG 174777 28 96.4 33 ...........C................ CTAAAAAACTCAACCAACGCCGCACTTTATGCG 174716 28 100.0 32 ............................ TTTCCCAGCAGTGAAACAAGTGCGTCACTGCC 174656 28 92.9 32 ...........C.C.............. CAGTGATGCTTGTAATTCTCAGACCAAGTTGA 174596 28 96.4 32 ...........C................ AGATGTACCAGGGTAGAGGTTTTGCCAACTCC 174536 28 96.4 32 ...........C................ ACGTCCAGTGGGAGCAAAAACTTGCTGACAGC 174476 28 96.4 32 ...........G................ AGTGCTGGTCTTTTTTTTCTTCCAAACGTGTT 174416 28 96.4 32 .............C.............. TTAACGGTATTTATGCGGATCGATATAAATCT 174356 28 78.6 0 ............GC......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 26 28 97.5 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAAGTGCCAGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGAAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGGTTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAGGGTTTTTGCGACGAAAATGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGATCGCGCAACG # Right flank : CGGCCTCAAGCGCTACTGTCTGGCTATTATCGAAGTAGTACTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAACGAGTTTCTTTTTTAGGGAATGAAAAATTGTGGGTTGGGTATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCATTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTGATTGTGAGATACGATCCCGTTTTAAAAACGCTTGTGGATGACGATTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAAACGTTATGCACACCAAACCCTAATGAATCCTGGAAAACGGCAATATTTGGCTGTACCGACCCCATC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 184431-185299 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYS01000010.1 Pectobacterium polaris strain F109 KHDHEBDM_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 184431 28 96.4 32 ...........C................ AGCAGAATAAAGAAACCTGCCAACAGGAACCA 184491 28 96.4 32 ...........C................ TGCGCTGCGCCAGTATTGCCAACGTGGGCGAT 184551 28 96.4 32 ...........C................ TGATCAGCAGCCCACTGAGCCTGCCCTTTCGC 184611 28 92.9 32 A...........G............... GTTCACACATCGAACGACGACTGCGAGAGGAT 184671 28 100.0 32 ............................ AGGGATACACACCCCGTTACCGTCGCGAGGAA 184731 28 100.0 32 ............................ GATAGTGTCGGGGTCGGGGCACTGCCGTCGCT 184791 28 100.0 32 ............................ GCTGGCAGGCCGTATTCAACGAAACGCGTTGC 184851 28 100.0 32 ............................ GGCACGTTATCAGATGCACAGCGCGCGAAACT 184911 28 100.0 32 ............................ AGATAGAGCGATGGATTCAGCGGTTAATTGAC 184971 28 100.0 32 ............................ TGAACCGCGCCCAATAATTCACTTTGTTTGTT 185031 28 100.0 32 ............................ ATGTCAGCTTTCGTCTCCTCCATTAGCAGGTA 185091 28 96.4 32 .................T.......... ACTATTTCGATAAAGAACGCCCCTGACATCAT 185151 28 96.4 32 .................T.......... ATATTGCGAGGGCAAAGGGCGGCATGCCTTAT 185211 28 96.4 32 ............G............... ACTCGTCAGCAGTCATAATTACCTCGTCACAG 185271 28 96.4 0 ........................C... | A [185294] ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCCGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGGATTCCCGACGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCCGTCTCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCTTGGTTCTGACCCTTTTCTGGCGACCAGCTGCAACTGATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGGTTTTCGACAAAAAAACCATATTTTCTTTAATAATCTGGTTGTTAGATTAAAAACCTAACC # Right flank : ATATCAGGAGTTTCACTTTGCCAGACATCATCCGGTCAGACTGACCGATTATTTAACCCAGTCTTCCAGCGTTAGCCCCTGTACTCGCTCAAACTCTCTGAGATTATTGGTGACCAATATGGCCTTAGCGCTGATGGCATGACCCGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTGGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGTCGACGACAGAAAGCATCAACTAGTTGCATATGGCGTGGCGAGGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGCAACTTGTCAATCACCGCTGTCGGGTGTTCACACATAATGAAGGAACAGATATTGGTATCCAGCATGAACAAGCGACTCACAGCTCGAATCTCCCCTCTTCGACTATATCCTGACG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 186270-186777 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYS01000010.1 Pectobacterium polaris strain F109 KHDHEBDM_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 186270 28 100.0 32 ............................ TTTCTGAACCGAGCCCACTACGGGCGCGCGTC 186330 28 100.0 32 ............................ AACAGGGGGAATTACAACATGTTGCAACAACA 186390 28 100.0 32 ............................ ACTGGCCATCCGTTCAACACCCATACGCTTAT 186450 28 96.4 32 .............T.............. GGTGTCGCAATGGTATCGAGTGCGCTACGTGA 186510 28 92.9 32 ...........T.T.............. AGCGAATCAAACTGCTGGGATTTTAACGGGTT 186570 28 89.3 33 .............T...........GG. AGGTGTACAGCGTGCGCGTCACTGTCGATACAA 186631 28 100.0 32 ............................ AGTCAGCATGTCGCTGTCGTCTAAAACGCAGA 186691 28 96.4 32 .............T.............. GCGCACAACTGGCAGAGCTGGGGAAGCAAGAA 186751 27 82.1 0 ...........T.........-C...TG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATCTCCCCTCTTCGACTATATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGCCAGCCACTTACCATTTATTATTGCTGGCTAAAACATAAACTAAGTATAGGTATTAATCACTCGATTGTATATTCATAGCATATGCAGATACTTGGCATAGGCCTATCGACATACGTTCATGACCCTTTTTTTACGAATCACCGTAACTCATTGATTTTTAATTTTGATTACCTGCCCTAATAAAAAAGAGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAACTAGGCAACTACCGTAAAATATGAACG # Right flank : GCTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAACTATTCCCCGTTGAGCGTGACAACCAGTGAGCGGCTACCGCCGTGGTTGCGATGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTTCCGAGCAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGAAATACGGTTCATCCTCCGGTACTAACCGATTAAAGAAACTCTCGAAATCTTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTTCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTGCCCACATCGCCGTATCCTGCTATCAGGCTTCGCGCGCCAGAATCGGT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 108912-106704 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYS01000009.1 Pectobacterium polaris strain F109 KHDHEBDM_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108911 29 100.0 33 ............................. AAATGGCGAGTATTCCGTGCAATTGCTCCTAAA 108849 29 100.0 32 ............................. GCTGTCACAAAACATCGTGGATATTTCAAATC 108788 29 100.0 32 ............................. CGCATTAATCTTCTCAACTAAATCACGCGGGG 108727 29 100.0 32 ............................. GGTGACGTCAGAATCACGATGATGCTAACTGA 108666 29 100.0 32 ............................. TAAGCTACAACTTTACGAATTGCGCGCTTATG 108605 29 100.0 32 ............................. TACGATGACAGGATTTGTGAACGCGTGCACGT 108544 29 100.0 32 ............................. TCATCCTCAACATTTACTATTTGTATTTTGTA 108483 29 100.0 32 ............................. CAAATCGGTTAACTACCGGATGTCTGAGAAAT 108422 29 100.0 32 ............................. GAAAAAGAGGTGCTGTTGCTTAAAGCCGCGCA 108361 29 100.0 32 ............................. TTGGCGGATTGGGTGCTGCGCGTGTGGCCGCC 108300 29 100.0 32 ............................. CGAATGCCTTACGTCAGCCTTGATGCGTTGAA 108239 29 100.0 32 ............................. GCGGTCCGCATGAAGATCGTTTCAGAACGAAA 108178 29 100.0 32 ............................. CAATGAGCGTGCAATCTGCGGCGTCTGTTCAG 108117 29 100.0 32 ............................. TCGCAGGGCTGGCCAGAACGAATGTCGCTACC 108056 29 100.0 32 ............................. AAGGATGACGCGAAAGCTGTCTGGATGGCCAT 107995 29 100.0 32 ............................. CAGCTCGCGAACGTGCCGCTGTTGCTGCAACA 107934 29 100.0 32 ............................. GTTTATCCCCGATTCATAACGCTGTCATGGCG 107873 29 100.0 32 ............................. GCTGTTTTACTCAGGGAACGTTCGTTAAAGAT 107812 29 100.0 32 ............................. CGTATTGCCACGACTGCGCAAAATCATGCCGC 107751 29 100.0 32 ............................. GATTCTGGCAAACCCTGACGCCATGGGGACAT 107690 29 100.0 32 ............................. AATACGATGTAATATCATCGTAAATACACAAA 107629 29 100.0 32 ............................. ATCGATAAGATTATCGAGTTGCTTGCCCAAAC 107568 29 100.0 32 ............................. CCTTCCAGGTTGCGGACATGGATGTATGCGCC 107507 29 96.6 32 .............T............... CGCGGCTACATCTGCGTAAAAGCGACGGCAGG 107446 29 96.6 32 .............T............... GCGCTCGATTGGGTGGACCGCAACGTTAATGT 107385 29 96.6 32 .............T............... AACTCGACACGCTAATCACACACGCCGTGAAG 107324 29 96.6 32 .............T............... TTGATAACTACCCCACCAGGAGTGACAGAGGA 107263 29 96.6 33 .............T............... CGCATCAAACACCGCCCAATGGATTTCAGATGC 107201 29 96.6 32 .............T............... GAAGCGGCATTGCAGGAACTAACCGAGGGATT 107140 29 96.6 32 .............T............... CTGTCGTTTGCTCGCGATCAGAATGCCACGAA 107079 29 96.6 32 .............T............... ACCATTTCTGAATTTACAGTAACGGTCCAGGA 107018 29 93.1 32 C............T............... CGCGGCTGGGGTACTAATGGCGCATCCGCAGG 106957 29 100.0 74 ............................. GTATCGGCTGCGCCGAGTTTTCCGGCGGATGAGTGTTCCCCGCGCCATCAATAAGGGCGCATCGATCAAGGTTC 106854 29 100.0 32 ............................. GTGTTGGAGTTTTCACCTTTGCTCGTCGTACT 106793 29 93.1 32 .A...........T............... CTTGGCTTACTCGATATCCGGCTCGCTCTAAC 106732 29 86.2 0 .........A.C.G.............T. | ========== ====== ====== ====== ============================= ========================================================================== ================== 36 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAATTCTCTGCTAATTATTTACTGTGTTACTTCAGTACGACGGATATGCATTGATTGCTTTCAATTTATGTCAATATGCTTGTAATCATTAGATATAGTGGATGAAAAACTTTGGCATTTACAAGATATATTGAAATTCGGTTGAGAAAGAATGTTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAATCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGAGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTTTAAATATCCCCCGCACGGGTTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTTACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCCGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGCCGGTGAGACGACACGGTATGATTTCACCCGCATTAGCCCAGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTTAGTAGTGGGCGGTTGGGGCGTGAAGAAGGCTCCGCGCTGTTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGGAGTATTCCGCCTTCCAATGTGTTCCAGCCGATTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114402-111095 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRYS01000009.1 Pectobacterium polaris strain F109 KHDHEBDM_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 114401 29 100.0 32 ............................. CCAATTCTGGCAGGCCAGTAGCCATCGCAACA 114340 29 100.0 32 ............................. ATAGAGAGGAATAAAAAATGACATTAGTCGAA 114279 29 100.0 32 ............................. TCGGCGAAAATAGCGCAACTCCGTGGACAGGT 114218 29 100.0 32 ............................. GCACCGTTCTACACATGGTAATCAACGAATCG 114157 29 100.0 32 ............................. CCCCAAATAACGGGGCTTTATTTTTGGAGTGA 114096 29 100.0 32 ............................. ATGAGCCGTAAACGTCCTCGCCGTTCACATCC 114035 29 100.0 32 ............................. AGAATTGCGAACGAGTAATTCTGCATCAGCTA 113974 29 100.0 32 ............................. TCATTTGTTACGATTTCCTGGTTACAGTTACG 113913 29 100.0 32 ............................. GTATTTAGCGAGCAGCAACGCCAGATAGAACA 113852 29 100.0 32 ............................. TAGATCGTCATGACCCTCCCATCCGACCAGAT 113791 29 100.0 32 ............................. GGAAAAATGATCGTGCCACCAGCAATTAGAGT 113730 29 100.0 32 ............................. TGCTTGCCCAGTTTCAGGAACGGGCTTACCTT 113669 29 100.0 32 ............................. CCCTACTATTCAAATCAGTTTAGTAAAGTTAG 113608 29 100.0 32 ............................. CTGTACCCGATAAAATCGCTCGGCGGCGTCAT 113547 29 100.0 32 ............................. ATAAACCCCCTATCTCTAGCGGCGGTGAAAAT 113486 29 100.0 32 ............................. CTACGGAAATCTGGAGCGCCTGCCGCGTTGCG 113425 29 100.0 32 ............................. TGAATATCGACGCTCAAGGGCAGGCGATACTG 113364 29 100.0 32 ............................. AAACGCACACGTCCCGCATCTCGGTAACCCAT 113303 29 100.0 33 ............................. GAAATCAGCGGCCGCTGCGTTTCTCAGCCCGGT 113241 29 100.0 32 ............................. CGCTACTGGATGCGATTTTTGATGACGACAGT 113180 29 100.0 32 ............................. AGTCAATAGGTCACTAATTTAACGTATTTAAC 113119 29 100.0 32 ............................. CGCGCTACAGGTGTAATCGCGGCATCGACCCC 113058 29 100.0 32 ............................. CACAGCATCAGGATCGATATTCAACGCCTCGG 112997 29 100.0 32 ............................. TCAGCAAATTTGCCATTGTCATCGGGGTACAG 112936 29 100.0 32 ............................. CGAAGGGTAGCAAGCCAGTGCAGAAGGAAATC 112875 29 100.0 32 ............................. CGCTGGCACAACAAGGGGTTAAGGCGGTGAGG 112814 29 100.0 32 ............................. TTCGTCACGCCAGTTATCCGGGAAAGTTTGCG 112753 29 100.0 32 ............................. TGAAACAGGTGCCGACGCAAGCCCAGGTCACT 112692 29 100.0 32 ............................. GTCGGAAGGCCAGCCCGTCTAACTCAACGTTA 112631 29 100.0 32 ............................. GACGTTAGCCCGCACCTGATGCGTATGATTGG 112570 29 100.0 32 ............................. CTGTCGGTACCCCGATCGGCGCGCCTGTAGTG 112509 29 100.0 32 ............................. CCGATTGTTATCAAATGTTATGGTCCAGTCCC 112448 29 96.6 32 ...........A................. ACATTACCGCAATTGCAATGGCAATTATTGGT 112387 29 100.0 32 ............................. GCAGTGAAAATGACGCTAATTGAATACATCAA 112326 29 100.0 32 ............................. AGGTTATGCAAGCGATCGGCGACTACGCGACA 112265 29 100.0 32 ............................. GAATTGGATGAAAATTCCATCGAGGGGTTATT 112204 29 100.0 32 ............................. TTGCCATGAAAAAAGGCGTTAAGCCCGCACAC 112143 29 100.0 32 ............................. GATGAGTAGAACAATAAAAGGCTGGACAATAT 112082 29 100.0 32 ............................. CGCGTCCCGCAATTCGCCAGGAATAGGCATAG 112021 29 100.0 32 ............................. AATCTGGGGCGCTGGTTAGGTATGGACTACAT 111960 29 100.0 32 ............................. CGTGAGGCAGACCTTCAAGCGCGTGAGGCGAA 111899 29 100.0 32 ............................. GGCGTGGGCGTCTACTTTGCTACTCAATCACC 111838 29 100.0 32 ............................. ATGAGACACAACAGGTAAACGTGCGAACCCAG 111777 29 100.0 74 ............................. TTCGGGCGGCGCGTCAAAAGGGATTGGCGGCGGTGTTCCCCGCGCGAACGGTTAGCGCTGCCATATTGACTTCA 111674 29 100.0 32 ............................. AATTCCTTAAAAAGCGCAAATGATGAATGGCA 111613 29 96.6 32 .........A................... CGCTGATTTCGTAATTCACGCAGCGCACGGTC 111552 29 100.0 33 ............................. GGGAAAAAAGGCGGGGCTGGCGTTACAGTTGCA 111490 29 96.6 32 ........T.................... GGCGGGGAGACGGCGACGCATAAAGTCAAATA 111429 29 96.6 32 ...........A................. ATTGCGACGTTTGGATCGGGCTGTACCGTGAT 111368 29 100.0 33 ............................. AACCGTTTGCAGGTAGCCGAGACGGCCGACAGC 111306 29 96.6 32 .............T............... TTGATCAAGCCGACGACGATGAAGGAACTGAT 111245 29 100.0 32 ............................. TTAAACGTTCTGAATCCGACATAATCCAGCAC 111184 29 100.0 32 ............................. GATGTGCCCGCGAACTTGCTTAGACGCGACGT 111123 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ========================================================================== ================== 54 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTTTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGACGCACAGCCTCCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTATGGCTATTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATGAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTTTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGTGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAACGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //