Array 1 35213-36163 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHS01000011.1 Butyricicoccus sp. AF10-3 AF10-3.Scaf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 35213 32 96.9 33 ............A................... ACTGTTGCGATCCTCCTTGCCGACCGGCGTACC 35278 32 100.0 34 ................................ GGTGTTACCACTGATTACTTACTCGTCAAGAGTG 35344 32 96.9 33 .....................C.......... AATCGTTTTAACCCAACGCGCCAGCGTAGACAC 35409 32 100.0 33 ................................ GCGGTGTTAGCGAGAACACGGTCGATCTTGAAC 35474 32 96.9 34 ............A................... CGCGCCTGCGAGTGCTTCGCTGGTACCCTTAACC 35540 32 96.9 34 ............A................... AGCAGCGTTACGATTGCGCCCAGCATCGGCTGGC 35606 32 100.0 33 ................................ CGTTTCTTGCAAAGTGGCTGCACCTGATCTTGC 35671 32 100.0 34 ................................ ATGTCCTTGTAGGACTGGATGGTATCGTTTGCGG 35737 32 100.0 34 ................................ AAGTGCCATCGTATCAACGACAGCGCCGCCTATG 35803 32 100.0 34 ................................ TGTGCCGTGACAGTAGGCTTGACGCTGCAAACCG 35869 32 96.9 34 ...A............................ ACTCCAGATAAGCGTTTTGCAGGGCAGGCCGCAA 35935 32 100.0 35 ................................ ATATTTTCCACGAGTTCCGCGCCCGGAACGCTTTC 36002 32 100.0 33 ................................ TCTTGTTCTGTACTTATTATACTACGCTAAATG 36067 32 100.0 34 ................................ CCGTACTTTTCTTGGAGGCGAGGATGCGACTTGA 36133 31 93.8 0 .................-.....A........ | ========== ====== ====== ====== ================================ =================================== ================== 15 32 98.6 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : ATGCTGTGCTGTACTATTCCCGCGGGCGCGCTGTTCTACGGCGAGCCGCGCCGACGGACGCCTGTCGAATTTACAGACGAACTGCGGCAGCGTGTACGCGACAGCCTTGCCGAAATGCACGACTATCTGCGCCGCGGCTGCACGCCTAAGGTAAAACCGCAGAAAGGCTGCTCGGCCTGTTCGCTCAAAGAGCTGTGCCTGCCCAAGCTGATGAAAGTCAAATCGGTTTCCGGCTACCTGAAAGGAGCGATGGAGGAATGAAAAAGCTGCTTAACACGCTGTTTGTCACCTCCGAGGACGCCTATCTGACACTCGATGGCGAAAATGTTGTCGTCAACCGCGAGAAGCAGGTAACGGCTCGATTTCCGCTCCATGCCCTCGCCGGAATTATCAGCTTCAGCTATGCAGGCGCGTCTCCGGCGCTCATGGGCGCATGCGCAAAACGCGCGGGAGCGTGGATTGAAATGAGAGTACGGTGCGATTTTCCTAAAATCCATTGG # Right flank : TACCGTTTGGTGGAGACCTGTCACCAAACGGTGACGTCGCTCCCTTCGCGGAACGATGGCGATAGCCGCACCACCATCCTCCCGCCCAACCTCGCCCCAGTCCCCCACCCTTAGAATCTTTCACCCCCCCGACCAAAACATTTGCACATGTCATGACACATGTGCTATAATAACTCCAATACCGCTATTGACAGCGCCGCACAGATTGCTGCGGCGTTTTGCCGGGAAGGAGAAAAATCAAATGAACGCATACTTTGACAGCATCGAAAAGGAGGTTCCGGAGCAATTACAGCAGGTTTTCCTTAATCGCCGCGATACGGCTGTCATTACGATTGACATGCACGATGGACACCTGTCAACCGACCCGGACTGTCCATGTCCGTCTCCGCGAGGACGCGAGATCATCGAACCGCTCAATCATTTCATGAACGAAGCACGCGCGCTCGGTCTGCCGATCATTCATGTCCGCTCAACGCTGCGTAAGGGCGGCGCAGACGAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.00,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32216-31935 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUHS01000002.1 Butyricicoccus sp. AF10-3 AF10-3.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 32215 23 100.0 42 ....................... TTACTTCTAAAGCAACAGACCATTGCTGTACCGGATTGAGAG 32150 23 95.7 43 .....................G. ACATCTCCAAAACTCAAGTGTTTTCACAAAACTGTAACTTTAT 32084 23 100.0 43 ....................... TTACCTCCAAAACCGACGGCATTCCAACATAGGTTCGCGCTTA 32018 23 87.0 38 A...................T.T CCACCTCCTACCGGATATGAAATATCCGTTCCATCAGG 31957 23 78.3 0 .......C.......CG..C.T. | ========== ====== ====== ====== ======================= =========================================== ================== 5 23 92.2 42 GTTTGAGACCTATGTAAAATCAC # Left flank : GAAATACCTTCAAACCTCTGCCGGTGTTCGAATATAAAGACCATCAGGTTTGAGGCCTATGCAAAACTGTCTACCTCTAAAACTATCCCGCACCGCCCAAAAGGCAAGGTTTGAGTTCTATACAAAATTACTCACCTCCAAACTCACTGATTGCCAGACCTCTCGATAATGGCGGTTTGAGACCTATGTAAAACTATCTATCTCTCAATTCCATCACAAGGAGTGATTCCGACGAAGAAGACCTACCAATTTAACGCCGAATACCAAACAGACGACTTAGACTTTGCTGTTGGCGTTTCCCTTTTCGATCAGAACGACAATATGGTGTTTTCGGCATGGAATCTAAATGAATGCCCTGAGGATGCTGTAATTGGTCGAGATCTGTTCGACGAAAAGGACTTCATTAAGGCTGTTAAGCTGGGAATGGAGTTAGCAAAGCAGGGATATGATGATGTTAAGTATGTTGATTCTACGGGGTTGTATGGGCCTAAAATTTAAGT # Right flank : TTTCAGCGGCTATCCCGTACCGCTACGCGCGTTTGAGCCTTTAAATTACCTCTAAACTATGACTGCAGTTGTTGATTCGGGGCTTTTTGAGTCTACTATGTCATTACCTCTACACAACCATTTTCGCTTATATATAGGAGGCGACTTCTTTGTTTATCGTCGGCATTATTGCTGGCCTGTGTCTTTTCGCAACGATTGTTTGCGTGACCGCTGTTATTGCGGCCGGACAGGCTGATTACAACAAAGCTATCCGGAGAGATTAACCCTTCTTTCTCTCATATGTAAAAGTCCTTTGGACTGATTATATTTTTGCGACCTATGCGAAACTTCTACCTCTACAATGGAGACCAAAAAACATGAAAAAGACTTACAATAAACTCGTTCGAGACAAAATCCCCGAAATTATCGACAAAGACCATCAGAGCTGCGACATTGAAATTTTATCCGATGACGCATATCTCACAATGCTTGATGCCAAGCTGGATGAAGAGCTTGCCGAG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGACCTATGTAAAATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //