Array 1 132732-131904 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UHEZ01000003.1 Streptococcus agalactiae strain NCTC11360, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    132731	    36	 100.0	    30	....................................	CAGTTTCTAAAGGTGGTCATCCGTCAGCTA	
    132665	    36	 100.0	    30	....................................	ATTGCTAAATTGATTGACAGCTTTTCAAAA	
    132599	    36	 100.0	    30	....................................	GCTGGAGATTTTACAAGCAGTTTGAATTTC	
    132533	    36	 100.0	    30	....................................	ATCACACCAGTCGTTATGATGGATGACTAT	
    132467	    36	 100.0	    30	....................................	TGTCAACAGTACGTGAGACGAGTGTGTAGG	
    132401	    36	  97.2	    30	..............T.....................	TGAAGTTGATGGATATGTTGATTTAGAGCT	
    132335	    36	  97.2	    30	..............T.....................	TAATCATTTTATGAGAGATACCGCCTCAAG	
    132269	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
    132203	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
    132137	    36	  97.2	    30	..............T.....................	AGTTTCTTGTGGGTTAGCTTGTCCACCGTA	
    132071	    36	 100.0	    30	....................................	GAACATGAAAGATTTTAAAAAAGAACATTT	
    132005	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
    131939	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  98.9	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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