Array 1 25461-26285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUD010000011.1 Alloprevotella sp. Lung230 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25461 36 100.0 30 .................................... TGAAGCGTCTACGACTCCATTGGCAAGACG 25527 36 100.0 30 .................................... TCGCGCTGCAAATTTAGCAAACAACTTACG 25593 36 100.0 30 .................................... CACTTCCCGGATCGTCTCCCCGAGATGAAG 25659 36 100.0 30 .................................... CAGTCGTAACCGAGTATGACGTGGATTATA 25725 36 100.0 30 .................................... AATCACTCGTACTAATGTCACCCTTGTTCA 25791 36 100.0 29 .................................... CAATCTCATTACGTTCCTTACCAAGCTTG 25856 36 100.0 30 .................................... AAATGTAACCCCACTTTGTAATCCCACGTG 25922 36 100.0 29 .................................... GCCATCGGTTCAGTCGTCCCAGTCATCGG 25987 36 100.0 30 .................................... GAAGCCGTCATATTCTCTTTACGCCAATCG 26053 36 100.0 30 .................................... GCATGTGATGGTGGTCGTGAGCAAGAGCGA 26119 36 100.0 29 .................................... CAAATAGTTGAAATCATGAAGAAATCACC 26184 36 100.0 30 .................................... GATGCTCGCCCAGGCTGGTCTTACCGAGTC 26250 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTGGTTTGATGTATAACCGCCAATAGAAACACT # Left flank : CCCTCTTTTGTGGAAATGGGGTAAGACTTCTTCTCTCGGCTTCACCATTCCTCTTAATTTCTCCCCATTATGTCTGAGGTTAGATTAAATGCTTATCATATCATGTGGCTGATAGCAATGTTCGATTTACCCACCATGACAAAGAAAGAGCGCAAAGATGCTGCGCTTTTCCGTAAGAATTTAGAGCAAGATGGGTTTGTGATGTTTCAGTTTAGTGTCTACATGCGTTTCTGTGCCTCGCTTGAAAGCGCAGAGGTTCATCTCGAGCGTGTACGCCTGTCTGTCCCAGATCATGGGAAGGTGAGTATCCTTACGATTACCGACCGACAATATGGCAATATCGTCAACATTTGGGGAGCTATCGAGAAAAAGAAAACGCCTCAACCCATACAACTGGAATTTTTTTAGTAATTTTGCCAAGATAAGATACTTACATTTCCACTTCTTAGAGAACTCTGCACTTGTTATTTCATTGTCTTTTAAACCTTTGCATTTCCTAC # Right flank : TGGAAATATGGACAGATAAACTCCGTATTCTGTTGTGGTTTGATGTATAACCCGGTAAGGCGAGCGGAAAAGTAGCAAAAGATATTTGAACAGATTTGTTGGATTTCTCACTCGACAGAGCGATCCCAAAAGGAGTGTCCTATGGACGGAAATCGAACAAATCTGTTCAAATCAAACAAATCGGAATGTTTTCGTTCAGCCGAACGTACTGAGACGAAAGAGGAGTTTTGAGCAATTCCGTGACGAGAAAACATCTGTAAAACGAATGTTTTCGTAGGATGAATCGGGACGAATACGCTGCTCGCGACATCGGGTTTCTGCTTATCTTCCTCAGAGGTAGTCTTTTCTATCTCAGAGGTAGTTGAATTTAGCTCTGAGGTAAAATTTCCCCGCTCCTATTGCTTTCTCTCGCGCGCGTATGCGCGCGTCACTACATGTAAGTCGTGTTTTTTGCCTTCACTGCCTTCACCTGGAGAGACAAACTGTTGAAAATAAAGATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTATAACCGCCAATAGAAACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 14263-11444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUD010000017.1 Alloprevotella sp. Lung230 contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 14262 47 100.0 30 ............................................... TGCACAAATCGGAGGAGCGCTCGCGAGTTC 14185 47 100.0 30 ............................................... AGATTAAATCCCTATTTTCGCGGTGAGAAT 14108 47 100.0 30 ............................................... GGGCTGCAAGGGCAACTTTAATGCAGAAAC 14031 47 100.0 30 ............................................... AAAGTTTCAATCTACATATATATTGATTTG 13954 47 100.0 30 ............................................... TGCGCAATGATTTCAAGTGATAGAGAGCCT 13877 47 100.0 30 ............................................... AATTTGCAGCTGTAACCTCGGCGTTCATCT 13800 47 100.0 30 ............................................... CGTTAAATACGAGTACTTCGGAACGTTGCA 13723 47 100.0 30 ............................................... AAGTGGGCGTTTAAGCGCAACAGCCACGAA 13646 47 100.0 30 ............................................... TACATCGGAAAAAGGGGCTATTTTTGCACT 13569 47 100.0 30 ............................................... AGAACCAGCCTACAAACTCTTCATTCGTCA 13492 47 100.0 29 ............................................... GAAATCTTTGGTATGCCCATGCGCATCGC 13416 47 100.0 30 ............................................... AGGAGAAGAACGCCATGGCGCGCTGGTCAA 13339 47 100.0 30 ............................................... TCGCGCGGACGCTCACCTTCAACTTTCCCT 13262 47 100.0 30 ............................................... CCCCGGTGGTAGAACTGACCACCGAGTGGA 13185 47 100.0 29 ............................................... TAGGTCTGCGCCGACTTCTCGAGCGCACC 13109 47 100.0 30 ............................................... ATCTTTTGCCGTCATCATACCCGCCTTTTC 13032 47 100.0 29 ............................................... GACTTCTTCTCTCTACCGCTCCTCTCGTC 12956 47 100.0 30 ............................................... CACAGCCTTCCGCATCTTTGGCGCAAGCGG 12879 47 100.0 30 ............................................... TATGATTACCCAGATGAACCCGAGTCGCTC 12802 47 100.0 30 ............................................... GAGTATTGTATCTTCTTCTTGGGGAGTATC 12725 47 100.0 30 ............................................... TACAAGCCTTTTACTTCGTCGTTGAAGTAT 12648 47 100.0 30 ............................................... TATCAAAATGAAATTACTATTTTTGTCGTG 12571 47 100.0 31 ............................................... GTCGGAAAGAGTTCCTCGATAGGCTTGCCGT 12493 47 100.0 30 ............................................... TATATTCTTTAGCTTTGGACTGTCGGAGCG 12416 47 100.0 30 ............................................... TTTCATCAAATCGAAGAGTTCTTGCTTCTC 12339 47 100.0 30 ............................................... ATTTGCGCAGCCTGCTCTACGGAAGCATCT 12262 47 100.0 30 ............................................... CAGCGTTGGGTAGGTTTTGCAGTACTCCCA 12185 47 100.0 30 ............................................... ACGGTAACAACAAGGGTCTTCCTGCCGAAG 12108 47 100.0 30 ............................................... AAGGTAGCTGTGATGCACAGACCCACCGCA 12031 47 100.0 30 ............................................... TCATAATGAGTACGTAAAATTCCCTTCTCA 11954 47 100.0 30 ............................................... GCAATACGATAGCCACCGCCCCAGGGGATT 11877 47 100.0 30 ............................................... CAGGCCGACAACCGCGTAAAGGCCGAAGAG 11800 47 100.0 30 ............................................... ACTGCCGCGGTTTGCCGCCGCGGGGCGCGT 11723 47 100.0 30 ............................................... GGAACGGTGTGATTGTCAGAAATTGTCCTA 11646 47 100.0 29 ............................................... CCCTACGACCTAATCTCCCTCATTGAAAG 11570 47 100.0 30 ............................................... TAAGAGAGAGCGTACAGCTCATCGTCCGTG 11493 47 89.4 0 ....................................GG.T...A..A | T,TG [11448,11451] ========== ====== ====== ====== =============================================== =============================== ================== 37 47 99.7 30 GTTGTTACTCATACTGCAAAGGTACTCAAATTTAAGCAAATCACAAC # Left flank : CCACAACGGATTCATCTGAGAGATTGCGAAGGTGCTTGAGTATCAACAAACCACACATCAAACGTATCGGCTTACTTGGGCGACCATTGTGCTGACAATACAAAGGCCGGAAAGCAGCATCGAATTTCTCCCAATTTATTTTGTCGGAGAGTTTGTAGAGAGGGCGAGAGGGGGCCGGCATATCCGACAAACTGCTGAATAATGAAGGGCTGGGATAGGGCTTTTTAATCATAAAAATCTGCAAGTTTCTGAATACAAAGATAAGAAAACTTGCAGATTTATCAAAGGAATATCTTAATTAAATTACTGAATATCAGATGATAAATGGGAATTTAAGGGACGACTATTTAAGGAAGGAAGACGCAAGGCTAATCCCGAATTGGGGTTAATAGAAAATGAAGAAGATATGGTGTCAACCAATCTTCTTCATTTTGATAGTACCTTTTTTATTACTAAATTACGACGTAACTTTCTAATAAATAGACATTTAGCAAGAATGA # Right flank : TCAATCCACTGAAAATCAGATAAATCTTTCGTCAGCGTGCTGTAATGTGGAAGCAAGACTGGTGCACTTCGTATTTCACGTAGCACGTCCCCATGCGGCGCTGGTCGTCGAGCACCTCGGCTAGGACACTCTTGAGCTGCACACCCCACGTTTCGGGCTGCGGCGGGAGGGCAGGATCCTGCACGCGCCGATAGAAATTGTAGGAGATGTCGAAAGTCGTGCCGAATCGGTGGCAACTCTGCTCGCTGGCGTTGCCATTGTGCCGGCGCAGCCGCTCGATGTCCTCGTTGGTACGCAGCACGGAAGTAACTTTCAGTTTGTGGAAGGGCAACCCTTTGGACGCCAGACTATCGAGAAAGGAGCGCCCGATTTCGTTGAGCAGGGTGGCGGCACGAGGCACCAGGTAGGGGGTACTGTGGGTAAGGTTTTTGAGTTCGTAGAAGGGACTGTCGCCGATATAGACGAGGTCCTTTATGCGCTGCGCTGCCTCTGCACGGTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTACTCATACTGCAAAGGTACTCAAATTTAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //