Array 1 18075-16948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLW010000025.1 Escherichia coli strain Pk8565 NODE_25_length_61076_cov_127.920572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18074 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 18013 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 17952 29 96.6 32 ............T................ GAACTTGATCTGATTTGTGAATTTATTCGATC 17891 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 17830 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 17769 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 17708 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 17647 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 17586 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 17525 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 17464 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17403 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 17342 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 17281 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17220 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17159 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17098 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 17037 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16976 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47103-47972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLW010000015.1 Escherichia coli strain Pk8565 NODE_15_length_112828_cov_119.003051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47103 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 47163 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 47223 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 47283 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 47343 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 47403 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 47463 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 47523 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 47583 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 47643 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 47703 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 47763 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 47823 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 47883 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 47943 28 85.7 0 ....................A...C.CT | T,C [47963,47967] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 53309-54357 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLW010000015.1 Escherichia coli strain Pk8565 NODE_15_length_112828_cov_119.003051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53309 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 53369 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 53429 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 53489 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 53549 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 53609 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 53669 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 53729 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 53789 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 53849 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 53909 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 53970 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 54030 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 54090 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 54150 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 54210 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 54270 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 54330 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8913-9856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBLW010000032.1 Escherichia coli strain Pk8565 NODE_32_length_49281_cov_124.103752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8913 29 100.0 32 ............................. GGTGATTTTGACGTGTAAACCGGGCGGATTCT 8974 29 100.0 32 ............................. GCTACCCCACTGGCGCTTTTTCGCACTGAAAA 9035 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 9096 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 9157 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 9218 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 9279 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 9340 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 9401 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 9462 29 100.0 32 ............................. GGATCTAACGCGCTGTCAAAATTCCGTGCTTT 9523 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 9584 29 96.6 32 A............................ CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 9645 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 9706 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 9767 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 9828 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //