Array 1 2426610-2425507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012914.1 Azospirillum brasilense strain Sp 7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2426609 32 100.0 37 ................................ CATCCCCTCTCAGTACAAGATCGTCCAGCTCACGGCC 2426540 32 100.0 35 ................................ AGGAAGGTGTGCACGCTCGCCCCAACGCACGTCAC 2426473 32 100.0 34 ................................ TGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCG 2426407 32 100.0 34 ................................ TGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCG 2426341 32 100.0 35 ................................ TGGCGCTCGGTCGATCCATGGCGGTAGACCCGCAT 2426274 32 100.0 35 ................................ TTGCGGCAAATGTCAGCGAGCTTCGTCATGGGCGC 2426207 32 100.0 36 ................................ GCTAACCACTATCGAAACTCTAGCTTCACGGCGGTC 2426139 32 100.0 34 ................................ ACAAGTCCGGCCTCATGAAGTCCTGGGGCGGCCT 2426073 32 100.0 35 ................................ CCTCCTCATCTGGCCCCTCAGGCGAGGATGGCGCG 2426006 32 100.0 36 ................................ ACGATCCTGTGGGGGCGGGAGTGGCCGCGGAGTTTC 2425938 32 100.0 34 ................................ ACGCTCCAGGCCGGGGACAGCCTGGGCACCGGAC 2425872 32 100.0 34 ................................ CGGGCTGGCCGGGGCGGCGTGTTGCTCGGCAGCG 2425806 32 100.0 36 ................................ AGTGCGGTCGCGATGCTCGACGCCACGCCGTTGAGG 2425738 32 100.0 35 ................................ ACCGTCGTGTGGATGGACTTCGACGCCGCCAAGGC 2425671 32 96.9 34 .........C...................... ACCTTCCACACAGCGGCCTGCTTCCAGGCGTCGT 2425605 32 96.9 35 .........C...................... GCCACCTGCACCGGGTCCGTGCTGGACTTCACAAC 2425538 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.5 35 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : CTGGATGGCTACCCGCCATTTCTATGGAAGTGAATCCCCATGCTGATGCTCATCACCTACGATGTGAACACCCAGGATGCATCCGGGCGCCGCCGGCTGCGCCGGGTTGCCAGAGCCTGTCAGGATTTTGGGCAAAGGGTTCAGTTCTCGGTTTTCGAATGCGACGTCGACCCGGCACAATGGGCCGTTCTGCGTGCCCGTTTGATCGGAGAAATCAATCAAGAGACGGACAGTCTCCGCTTCTATCATCTCGGAGCCAACGCGGCCCGCCGCATCGAGCATGTGGGCGCCAAACCGGTGCTGGATCTCGGTGGCGCATTGATCTTTTGATCGGTGCGAACCGGAAGCGGACACGAAACCCCCGAGGGGTTCGCACGTCATTCTCATCAATGACTTGTGCGGCTCCGACACCGGAATGACTGCTTCCGCGGCCGCTTCCGAAGTAGGTTCGCATCCGTCGGGGGATTGTGGGTTCTTGAACAAGTGCATAAAGATGAGGA # Right flank : TTGTAGCGGTGGGCCTCGTCGACGAACAGGCAGTAGTCGCCCTTCGTGCGAGGGCTGCTTCCTCAAGCCGAATCGCTCCTGTTGTGAAAATCGGTTCATGACGGCTCGGGGAAATTCAGCGTTCCCAGGGCATCGGCAGGTTCAGTCTATCTGTAACTTGATACGGGTGTATTGAGTCATGGTTGGGCTAAACCTGTTGATGTTTTAAATAGGTTAAGTTGGACCGACTTTTGACGGTACTGTTTCCATAATAAATCTTAAGACAAATGGGCCGTCACTGCTCAATTATTATCACTGCTTCGGGTGAAGGCTCACGATGTGCTGCGGCGGTTTGGTTCTGCCCGGTTTAGGTGTGGGCGGGGCGCCATCCGTCTGCTAAGGAAGAGGGTGCGGCCGCCAGCCGCGGGTGACGAGAATGCGAAGGGCGGGAAGCGCGTGTTCGTTGATAGCTTTATGAATGACCGATGCCTCTCATGCGCTGATGTCCGGTCCGTCCATGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 2436095-2436596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012914.1 Azospirillum brasilense strain Sp 7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2436095 32 100.0 34 ................................ AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG 2436161 32 100.0 35 ................................ GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC 2436228 32 100.0 35 ................................ TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG 2436295 32 100.0 37 ................................ AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG 2436364 32 100.0 35 ................................ CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG 2436431 32 100.0 35 ................................ TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC 2436498 32 100.0 35 ................................ CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG 2436565 32 96.9 0 ....................C........... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : TCGTGCGCCAAGGTCCGCTTGCCTCGGCCGGAGCGGCAGTCGAGGCATGGCCTCCTCCCAACGGAATGGACAGCGGTTCGGGCGGTCGTTCGCTCGGCCCGTTAAGGACTTTTGTTCGGGAGAGGGGTGCGGTTGAGTGTCGGAAGAGGATAAGGATCGTCGTAATCGTCAAGGCTGAGGAACGGGTTCCGCTTTCCCCATCTGGGAGCACATGGCGCCCGCCGATGTGCAAACGGTGGGCGGAACACTGATCGGTGTCGAGGCGGCCTGCCGTATCGAGCACAGGGTGTCAAACCGGTGCTGGATTTCGGCGACGCGTTGGTTTTTAAATCGGTGCGAACCGGAAGCGGACATGAAACCCCCGAGGGGTTCGCACATCATTCTCATCAATGACTTGTACGGTTCCGACATCGAGATGGCCGCTTCTCGATTCGCTCCCGATGGAGGTTCGCGCCCGTTGGGGGATTATGGGTTGTTGAACAAGTGCATAAAGATGAGGA # Right flank : CAGATTATTACTATTTCGAATGCTTTGAATCGGGCCATCTTTATCATAGAACCCAAGTCACGCTAGTTCGGATGGACCCTGATTTCTCAGAACATCAACAAAGACTGCCCAAGCGTGACCCGACATAAGCGGCTTCGTCACTGGGAGATGGCCCTGACGGCGAAGTTTTGACGGAGCAGCACCATGGGGCCGATCCCGCAGCCCCGATCGATTGTCCTGCCCTCGCGCCGGTTCTATTCATAAACGGCGTTTCTGACATCGGTCGGAAACGCCCCAGCCATGCCTTCGAACGCGGTGTTTGTCAGGGCAACCACCGAGAGGCCGTTCTTGCGGTCGATGAACCAGGAATGGCCGTAGGCACCGCCCCATTGCAGCGTGCCAGCGGCCTGCGGTGTGCCCGTCAATGCCGGATCGTCCAGCACCGCCCAGCCATAGCCGAAGCCCCAACCCGGCCCCTGCGTTTGCGCCGTCGCGCCGACCTGATCATGGACCATCAGCCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA //