Array 1 99421-98460 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RQOY01000003.1 Streptococcus australis strain A13 D8784_contig003, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     99420	    36	 100.0	    30	....................................	ATTATGGCCTAATCGGTCTGATATCTCTTT 	
     99354	    36	 100.0	    30	....................................	GAAACTTTGGGCACACGCTAAAGGACAAAT 	
     99288	    36	 100.0	    30	....................................	AATTGGGATTGGGATAAAGTTATCTCAGAA 	
     99222	    36	 100.0	    30	....................................	CGAGGCCTTGGCCTATAGAGCGACACTGAC 	
     99156	    36	 100.0	    30	....................................	GTCCAATAACTGTCCTACCAACCATAGAAT 	
     99090	    36	 100.0	    30	....................................	CAAACCCTGACTAACAAACTTATAGAGCAA 	
     99024	    36	 100.0	    30	....................................	GGGTGGGAGCGGTGCTAGCACAGAATTAAA 	
     98958	    36	 100.0	    30	....................................	CTCCATCCTCAGGAAAGTTACGTTTTAACA 	
     98892	    36	 100.0	    30	....................................	AGCAAATTTTTCTTCATTAGCAAGTCTTTG 	
     98826	    36	 100.0	    30	....................................	TAAGAATATGGACGGCATCTTAGCTGATCT 	
     98760	    36	 100.0	    30	....................................	TGTACTCGCACTCGAGAAGCATTGGACGCT 	
     98694	    36	 100.0	    31	....................................	CCAGTGAAGCCAAGCTAGCAGAATTTAGACA	
     98627	    36	  97.2	    30	............................T.......	AGAAATCTGGAAACGTGCGCGTAAATGGCA 	
     98561	    36	  97.2	    30	.............A......................	CCTAGATTTCTCCAAACCGTCGGCAATCGT 	
     98495	    36	  97.2	     0	...................................T	|                              	
==========	======	======	======	====================================	===============================	==================
        15	    36	  99.4	    30	GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC	                               	       

# Left flank :   ATCAATTGAATGAAAAACCAGAAGTGAAGTCAATGATAGAGAAATTAGTCGTGACGATCACTGAATTATTAGCTTATGAGTGTTTGGAGAATGAATTGAATCTAGAATATGATGAAATCACTATTCTAGAGTTGATCGAAGCGTTAGGTGTTAAAGTAGAAACAATAAGCGATACTGTATTTGAAAAGTGCACGGAAATTGTACAAGTTTTCAAATATCTATCTAAAAAGAGACTCCTTGTTTTTATAAATGTTGCTGCTTACTTATCAGAGAAAGAAATTGAATGTTTAATAGAATATATTAGCTTAAATCAATTATCTGTCTTATTTTTAGAACCAAGGCAAGTATACAATTTTCCACAATTTATACTAGATAAAGATTATTTCTTAAATACTGAAAATATGCTATAATAGCAGTAATGACGGGATTCAGACGGACTGAAGTCTAGCTAGGACCAATAGCGCGATTACGAAATTTCGTAAGAAAAATTATTCTACGAG
# Right flank :  GCCTTCAATAATTTGCAGTACTCAGCAGCCTCTATTACCCGTAGTCATTTATTGTTTTTTTAAGCTTTTATTGTTACAATATCCATATAGACAAAAAGACTGGGATTCCAGCCTTTTTAATTGTTTTAAAGAAAGGTTTTTTATGAAACGCAAATCGATTTTGTTTCTATTTTTATTCTTGCTCTCGATTGGTCTGGCCTATGAGACGCAGTCTATCACAGCTGGTTGGATGACAGGCAGTCAGTATGGGATCATTGGTATCTCTGTCCTCTTGCTCCTAGTTTATGCGATTCCTGCAGTTTGGGCTCTCTTTCATTTCGCCAAGAAGTGGAAGTTGTCTTGGATTCCGGTTCTTTTTTCTCTTCTAGGTGGGGGCTTTATCGCAGGTTGGCTGTCAAGTTTTGCCAATACCTATTTCCACGAGATGATTCAAGCGGTAGCGCCAAATAGCGATTTTTGGAACCAGTATGAGAGTGCCATCGCAGGACCACTCTTTGAGG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTGTTTCGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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