Array 1 17692-17194 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVZ01000021.1 Streptococcus gordonii strain Blackburn contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17691 36 100.0 31 .................................... CTTTGGAATAGACTGTCCGTTAACGTCATCC 17624 36 100.0 30 .................................... GTAGTATTTCTCTCTAGCATAATCACGATG 17558 36 100.0 30 .................................... GATAAGGCATTTTTTGAGACGTGTCTGAGA 17492 36 100.0 29 .................................... AAAGTTTAGTAGCATTAATTGACTATGGT 17427 36 100.0 30 .................................... CGGGCGCTACACGGTCACTGCTGGAGCTTA 17361 36 100.0 30 .................................... TAAAAAAAGTTGGTAAAAAATCCTTGGCCT 17295 36 100.0 30 .................................... AAAAGAGCGCATCAAGTCGCTTAAAATGGA 17229 36 80.6 0 .........................G.G..ATT.GG | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : | # Right flank : TTATGCTATACGAATTTATTCAAAAAACAACCACCTATTTAGGTGGTTGTTTTCATTATCTATTACTGCTTACTAGAAGAACTTGAGCTACTTGAGCTGTCGCTGCTGGTTTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGTGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGATATCTACCTTGCCCAAGTCATTACCCTTGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGAGTATTGGCAGCATTACGAATGTCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTCTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 682-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVZ01000010.1 Streptococcus gordonii strain Blackburn contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 681 36 100.0 30 .................................... GGGTTAGGCTGCTTGTCCTCGGCTTGGAAT 615 36 100.0 29 .................................... CTGTCACAACGGCATTTGCTACTTTGCCA 550 36 100.0 30 .................................... AACACCGATCAATCTACCTTGCATCTGCAT 484 36 100.0 30 .................................... GTATTTTAGCGGATGCAAACAAAGTAGATG 418 36 100.0 30 .................................... GGTCTTTCTAGGATAGGGAGAACAGCTCTA 352 36 100.0 30 .................................... TAAGATTCCTGAGAAGGTGGCGTTTGTCTA 286 36 100.0 30 .................................... CGATTCCTCGAATAGTGTCATCTGATACTT 220 36 100.0 30 .................................... CGCACATCACTAACGAGACATTGATGGACA 154 36 100.0 30 .................................... TCTACAAGTTACCAGGTATCAAATTTACTG 88 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGACTATCTATCCTATAATGAGTTTGTGAACTGTTGCGAAAAAATGGAACTTCTTACCAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATCTTCATGTCACTAAAGAAGTATTAGAAGAAATCAATATTGTTTCCGATTATGTAGATCATTTTTATTCGTTAGAGTTTATGTATGAACGATTTATCAATCAATATCCAATAAATCAAATACCTAATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGAGCCTATTTATTTAGTTCGGACATTCTTCATATGAGCTTATCAATAGAGGATCAAGTAACATTAAAGATTTTAAATATCTTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCAGTCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGGAATTTAAGAATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGAATTTGAG # Right flank : CAAGGTGAGTTACCTTCTAATTTTGATTCGGGTTTTTGTACTCTCAAGATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-432 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVZ01000030.1 Streptococcus gordonii strain Blackburn contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... CGGCTTACTAAACCACTTGCTAGCGCCTTT 67 36 100.0 30 .................................... TCAAACGAGACAATCTGAGCGTAGTGGATG 133 36 100.0 30 .................................... TCAAACGATTTAACAAGCTGAATTCTGAAG 199 36 100.0 30 .................................... TCGCTTGTCTGCGTAGTCTCTGCCATGCTC 265 36 100.0 30 .................................... CTTGTGTTTGTTTTACATTCTTTACATTTC 331 36 100.0 30 .................................... CCAAGCGAGGTCTGAGAATAGATGCGAACC 397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : | # Right flank : GCTGTATGCGATCATATTCATCCGATGATAGTTTTTGTACTCTCAAGATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50-283 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAVZ01000047.1 Streptococcus gordonii strain Blackburn contig_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 .................................... CTCTGTATCCTGTTCTTTCGTTGTTCAAAA 116 36 100.0 30 .................................... TTTTATCCTTTGATGTCAAAGTGTGCCAAT 182 36 100.0 30 .................................... TTGCAAAGTGACGGCCTGAAACCATGTCAC 248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTTAAGTAACTGTACAACCTTTACGAACGTTAAGTCCAGCAACTTTAAG # Right flank : ACGAAAAGCGCCTTGCATTTGAACAGAATGGTTTTTGTACTCTCAAGAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //