Array 1 652775-653929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017064.1 Streptococcus thermophilus strain ST3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 652775 36 100.0 30 .................................... GACGTTCAATGAAATATTCTTATCAGACAT 652841 36 100.0 30 .................................... TCTGACGATAAAGAGAATATCTCAAAGGGT 652907 36 100.0 30 .................................... GGGTGCGATGGATTCAATGACAAAGAGCAC 652973 36 100.0 30 .................................... TAAAACTTACTGCAGACAGTGTTAATTATC 653039 36 100.0 30 .................................... CACAAAATAATTCGGTAGTTTTTACTAACT 653105 36 100.0 29 .................................... TTTGACCGTTTATTTAGACGTGCTAAAGT 653170 36 100.0 30 .................................... AATATCTACAGGTCACTACAAAGCTACGCT 653236 36 100.0 30 .................................... TGATAGAGAATGGTCGTTAAATGGTGTAAT 653302 36 100.0 30 .................................... TCAGTTTCAAATGCTCCACCACCGATATTA 653368 36 100.0 30 .................................... GTTCGGGTTCAGGTGGTTTTATACTCAACT 653434 36 100.0 30 .................................... AACATGCATCAGTTTGGATACGAGGTCAAG 653500 36 100.0 30 .................................... CGAACATTGCAGAACTGGGGAAATGGGTAC 653566 36 100.0 30 .................................... TAAGAAACCTGTCGGAGAAGCTAAAAGCTG 653632 36 100.0 29 .................................... CTCACTAGTCCATTAGTGCGGTTAGGGAA 653697 36 97.2 30 ...............G.................... TGGTACTACACCTCAAACGGTGAGTGCATG 653763 36 100.0 30 .................................... GCAACAATGGTTATAATTATCCCACACAGG 653829 36 100.0 29 .................................... GCATACGCTGTTACAAACACACCCCACCC 653894 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGAAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAATGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGCGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 914584-914332 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017064.1 Streptococcus thermophilus strain ST3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 914583 37 100.0 35 ..................................... ATGAAAATTACTAAAGCGATAAATATCCAGCGGAC 914511 37 100.0 34 ..................................... TAATTACCGTGGGTATCGCATTAGATTGTGGATT 914440 37 97.3 35 G.................................... CTTTATAACTCTTTTCTAGCTTTTGATAAGCACTC 914368 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 99.3 35 AGTTTCCGTCCCCTCTCGAGGTAATTAGGTTTATATC # Left flank : TTCTTTAATTATTACAAAGACAAGCTATTAAAAGATTTTTAAACCCCAACCACAATAAATGGCTGGGGTCTCTTCATTATAATCCGACTTCTTTTAAGGCATCCGCCAATCTTGCAAAATCGGCAATAGATAAAGCTTCTCCACGAATGGACGGCTTGATACCAGCTGCTTCCAGAGCCTTTTCTAATTTGGTCTTGACCTCTTCTGACTTCCCGAAGTGACTTGTCAAGTTGTTCCAAAGGGTTTTACGACGGTGAACAAAACTGATTTTAGCAATGCGGAAGAAGAAATCTTCGTCTTTAACTTGAACAAGTGGTTGTTCACGGCGGGTCATCTTGAGGATGGCTGAATCAACGTTCGGCGCTGGCACAAAGACTGTACGTGGCACGATGAAAGCAATTTTTGCTGTCATGTAGTATTGCACCGCAATTGAAAGTGAACCGTAAGCTTTGGTATTTGGTTCTGCTGAGATACGGTCCGCTACTTCTTTTTGCATCATC # Right flank : CCCATATCTTATGCTCTAGGCAGTTGCTAGAGGCACAAGATGTAGGACCTACTGGAAACACTATCTATAGTGTACCATATGATTAAAGGTCTATAAAGGCTTAGAAGAAGAGAATGTCATCTAATTTTTCAGCACTATGGTAGGGACTAAAACTAGTCACCTCTTCTTTGGTTGTCACATACACTATTATGCTGTCTTCTTCATCAGCCTTGTAGAAACCCTCAATATCCTTAAGGAGAGACTGATAATCATTTCTTGACAGGTCGACCTCGAAACAGGATTTTTGCACCCTCACGCCATAACCCTCAAGTAATTTCGAGAGTTTAAGTCTACGTTTGTTACTTCGGATATCATAAATAATCAGACAAAACATGGTTTTTTGTTTGGCAAACTCACGCTCTTCTTCGCTGAGGTTAAAGTAAAGTCCCATTAATGCCCTCCTGTGTAACTTGTCTCATAGAGACTAGGGTCAAGTTCTCTAAAAGCCCTAATCAAACTCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCGTCCCCTCTCGAGGTAATTAGGTTTATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1400778-1399223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017064.1 Streptococcus thermophilus strain ST3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1400777 36 100.0 30 .................................... GGAATTCACATTTATGCCACGGGGTGGTAG 1400711 36 100.0 30 .................................... CTAAGGTTTGATGATGTCGTACAGTTCTAC 1400645 36 100.0 30 .................................... TATACGCAACTTCCATATCTACAAAAGTCG 1400579 36 100.0 30 .................................... ATCTGGTTCAATGCATACTGATATGGTTAA 1400513 36 100.0 30 .................................... ATTTGCACCCTTTAACATCCATGATGTAAG 1400447 36 100.0 30 .................................... AAGTAATGCTAAGAAGTTAGCCGATTATTT 1400381 36 100.0 30 .................................... ATGGGATTGGTTCGATTAGTGAAAGCTCAG 1400315 36 100.0 30 .................................... GATTGCTTGGGCAATTTGCCAGTTTGGTTT 1400249 36 100.0 30 .................................... TAATACAGTTACATTGTCTTCATATGGTCG 1400183 36 100.0 30 .................................... TCGTTCTACTGTTAAACCAGTCTTAAAGCA 1400117 36 100.0 30 .................................... AATGACAAGAGTCGAGTTAGCCGAAAAAAT 1400051 36 100.0 30 .................................... ACCCTAAGATTCAGTGGATGCGTATTACCG 1399985 36 100.0 30 .................................... GACGCTTATGGAAATAACCTACAAACCTGT 1399919 36 100.0 30 .................................... TGTTAGGTGTAATAAATGTAAAAGTTATAA 1399853 36 100.0 30 .................................... ATCAAGGTTGTTAAATTCAAAAGCCACCGT 1399787 36 100.0 30 .................................... TCCATGCGTTTATTTCTTCGTCAAGCGTGT 1399721 36 100.0 30 .................................... TACCTCCCTGGCAACTTGCCCTAAATAGTT 1399655 36 100.0 30 .................................... CCAAGGGATTCAAGGACCACAAGGCCCTCA 1399589 36 100.0 30 .................................... CTCAATGGTTGAGGATTATCTTGAAAGTAA 1399523 36 100.0 30 .................................... CATCACTGACATGGGCGATGGCGGCTACTA 1399457 36 100.0 30 .................................... CGGGCTTAACATTCCACACAATATCCAAGA 1399391 36 100.0 30 .................................... AATCTGACACAGCTAACCACATGAGCGACA 1399325 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 1399258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //