Array 1 3258-5235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNZ01000083.1 Bifidobacterium longum strain 239-2 scaffold16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3258 29 96.6 32 ............................T TAATGCAGATAGTTAGTTTTTCTTTCTTCAAT 3319 29 100.0 32 ............................. GAGGCGGGCGTGCCGGCGACGGAGATTGCTGC 3380 29 100.0 32 ............................. CATGAGCGTCGAAACCTACTTCACCGTTGAGG 3441 29 100.0 32 ............................. ACCTTGCACGCGCAATGGGTGTCACCCGCCCA 3502 29 100.0 32 ............................. TCTTGGAACCATGCGTTGCGCGGAAGTACTTT 3563 29 100.0 32 ............................. GAGGCGGCCATGACCATGACGGATACCGGCGT 3624 29 96.6 32 ............................T GTGTTCCTTGAGTTACTTTAATGATGACAAAA 3685 29 96.6 32 .......................A..... TAACTACAGTATAACACACAACACACAAACAC 3746 29 100.0 32 ............................. GCGTGTTCTCCAGCAACCAATTTTTAGCCCTG 3807 29 100.0 32 ............................. ATACTGTATGCCCCTTATTACTGGGGGCATAC 3868 29 100.0 32 ............................. GCGGAAACATGTACAACCTAATAAACTATGAA 3929 29 100.0 32 ............................. ATGCCGCCTACTACTGGACCCGTCGCAACTGG 3990 29 100.0 32 ............................. TGGGTGTGGTGTTTTAAGTGTGAGGTCGATGG 4051 29 100.0 32 ............................. AAACCGTTCTGGAAGCCTTCGCAACTCGGAAG 4112 29 100.0 32 ............................. CGGCGCAATGCGAGCTGGTCGCCGGAGTCGCA 4173 29 100.0 32 ............................. TAGAGTCTGTCCGTGGCGAGCGGTTCGAATTT 4234 29 100.0 32 ............................. GGCTACCGGTCGGGGTCTGCGGTGACGTTGCG 4295 29 100.0 32 ............................. GACTCGGCTGCACCGATATCCGAGACCTCACC 4356 29 100.0 32 ............................. ATACTCAGTCTATCCAAGTGTTTATGGGAGTG 4417 29 100.0 32 ............................. CATTGCCGAAGGCGACCACGCTGGACGGCCTG 4478 29 100.0 32 ............................. ATCGCGGGCTCCGATGTGGGCCAGTCGGTCGC 4539 29 100.0 32 ............................. GCTTGTCATTGTCGCCAAACTGCGATAGGTTG 4600 29 100.0 32 ............................. GAACAAAAAAATGAAACAAGATAAATGGTTGG 4661 29 100.0 32 ............................. TCGAGCACCACGGCACCTGGCCCGCGATGCAG 4722 29 100.0 32 ............................. CTCGCCATGTACGGCGAGGGTGCGACCACGCC 4783 29 100.0 32 ............................. TGCGCAAAATCAAGACGGTGATACAGCGAGTC 4844 29 96.6 30 ............................A GCAATACAAGTCTCTTATTGACATGGATGG 4903 29 100.0 32 ............................. ATTGTCACCCTGTTGCTGTATCCAGTCATTGC 4964 29 100.0 32 ............................. TCATAAACCCCATTCCTATACAACCAATCAAC 5025 29 100.0 32 ............................. TTCGACACCGACTACGCCGATTACTCCATTAA 5086 29 96.6 32 ............................T TATGAGTCTCTCTAATGACGATATCGCTACTT 5147 29 96.6 32 ..................A.......... CAATCCTTCAACCCCTCCAGATCAGTCACATA 5208 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.3 32 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : CACGAGCGGGGATGATCCGCGAACTCACCTTCGTCTCGAGCAGGTGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCCCACGATAAGGCAGAGGAGGTCGTCAAGTTGGCCCCGCACGAGCGGGGATGATCCGAGGCTGCAAGACGCGTTGGAACGGCAGATCATGTTGGCCCCGCACGAGCGGGGATGATCCGCGAACTCACCTTCGTCTCGAGCAGGTGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAGCAACCGTATTGTGAAATTGCCCTCGG # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1710-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNZ01000106.1 Bifidobacterium longum strain 239-2 C1302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1709 29 100.0 32 ............................. GGTCTCGGCGAGGATCACGTATGTTTCATGCA 1648 29 100.0 32 ............................. TCGAGAGTGCTGCGGTTGCCCGTCAGCCGCAG 1587 29 100.0 32 ............................. CAGGCTTTCGCCAAGACCATCGGCTGGCTGGC 1526 29 100.0 32 ............................. AGGAGTCCTTGTACTCCCATTTGCCCTCGTCG 1465 29 100.0 32 ............................. CTCATGGCCGAACAGCGCTCCACGGGCGAATG 1404 29 100.0 32 ............................. ACCATCGGCTGGCTGGCCGCGTTCCTGGCCTA 1343 29 100.0 32 ............................. GTCGTGCCGAAGTCCAAGTACGCGACCAGGTG 1282 29 96.6 32 ............................T TTTACGTCGTTTCGACGGCGCATTATCAATCT 1221 29 96.6 32 ............................T ACGACGGATTACAAGCGTATGCGAGCCTCATA 1160 29 100.0 32 ............................. CTTTCCGCCTATGGGGAGGGTGCGGTCACGCC 1099 29 100.0 32 ............................. GAACGACCATAGGCGCGGCGGCAATGAACAAT 1038 29 96.6 32 ............................T CAACGCGACATAGCGATAAAAGACGAGTCCAA 977 29 100.0 32 ............................. TTACCCGATATTACGACAACTCGTATGGCTTG 916 29 100.0 32 ............................. GACGCCGCGGCCGCGTTCCGCATCGCGGCCAG 855 29 100.0 32 ............................. TTGACGTTTTCGAGGCCGTGTGCCACATGTTT 794 29 100.0 32 ............................. ATGGGCACCGACATAGGCACCGTCCAGCAGAC 733 29 100.0 32 ............................. CGCCGTGACCTCTCCGCCAAGATAGCGCATGT 672 29 96.6 32 ............................T AGGCGGTGTGGCATGACACAAGACCTAAGCAA 611 29 100.0 32 ............................. ACTTTCAACCCGCGTCAAAAAGTGAGTGGCTT 550 29 100.0 32 ............................. GCTACAAAGTGCTGAACATTTTCGGCAAAAGT 489 29 100.0 32 ............................. TGCCGCCGCCATCTTGACGGTGGCATAACGCC 428 29 100.0 32 ............................. AGTCGCCGAACGTTACCATATATCCGCTGTTG 367 29 100.0 32 ............................. GCCGGGCATGCCGGCGGCGTCGCTTCGGGCGA 306 29 96.6 32 ............................A GTTGCCTTCCTGTTCAGCAGCTGTTTCACTGA 245 29 96.6 31 ............................C CGGACACCGAGATAATACGTTGCATGTGCAG 185 29 100.0 33 ............................. GTACGATGATTTTCTACAAGTCGGCGGCCCAAA 123 29 100.0 32 ............................. CACCGCGAATCGTGGCAGCACGACTGTACGGC 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : TACCCAAAAAGCGCTCTTCACTTACTCCCACAACAACTCAACGACGAACCCACACCCACAAAAACAGCAATAGCGCCGTAAATGATGACCCCCACAAAATCCTGTATATTGCCAATATATGTGATTTCGGCACACGATTGGCAATAGAGCTTGCGAAGGGGTGAGTATGCGTATTACCTTTCAACACATCACCCAGTTTCTGCTTGCGATTCCCCTATTGCCATATACCACTGCTGTAATCAAATATTTTTATTTGACTCAACCCGCTTTTTCCTCGTAAAATCAGAC # Right flank : GGTGAGTACGGTCAATCGTCTGATTCGGACGACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2720-679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNZ01000096.1 Bifidobacterium longum strain 239-2 scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2719 29 100.0 32 ............................. CGTGGTTTTGTGCGCAAGAAGGATGCGGTTGA 2658 29 100.0 32 ............................. TCATGTCATCCATTGAACTCAGTCTAATCGGG 2597 29 100.0 32 ............................. CCGCCAGTTCGAAACTCAGATCCTCGTCCGAC 2536 29 100.0 32 ............................. GGATAATCTTATCTACCACTATCGCAACAGCG 2475 29 100.0 32 ............................. TATTGCATGGACGAGTACGGTTGCAGTGTTCA 2414 29 100.0 32 ............................. GAGCAAAAAATGCGTTACATAAACCAAATCAA 2353 29 100.0 32 ............................. GGGATGTTTAATGGTATCTATGGTACTCAGGC 2292 29 100.0 32 ............................. TAGCGGTGGTTTTTGTCATCCTTTTCGAGTAC 2231 29 100.0 32 ............................. GCGGGTAAGGCGGTTCAGGCGCATGCCACTGC 2170 29 100.0 32 ............................. GAACGCGAAACGAAAGGAGCGAGACCATGAGC 2109 29 100.0 32 ............................. GCTTCACCCGCCTACTCCACCTCAACCACGAC 2048 29 100.0 32 ............................. TTCGTGAACGCTTCGATACTGGTGTCGCCAAC 1987 29 100.0 31 ............................. CGGGGGGAGATTGCTGACAATCCAGCTGGCG 1927 29 100.0 32 ............................. CCGGACGCAGGCCGGGGAGATCCGCGAACTCC 1866 29 100.0 32 ............................. GCTGAAACCACCCACGGACCCGGACGACCGGA 1805 29 100.0 32 ............................. CCTACGCAGCCGATGACAGCGAGTGCGGCGTC 1744 29 100.0 32 ............................. AACTGGGCCTCGGCCTCCGGGTTGCCGCCCAT 1683 29 100.0 32 ............................. ATAATGCCATCTGGTGTTTTGACGGTGATTCG 1622 29 100.0 32 ............................. TTCATGTCGTCGACGGCCATCCGCTGGTCGGC 1561 29 100.0 32 ............................. CTCGCCAGGACCACCGGCAAGACCGCCGGCCC 1500 29 100.0 32 ............................. GACGCGCTCAACTGGGTCAAGGACAAGCTCGG 1439 29 100.0 32 ............................. GCCGGCGTGGAACCGGTCTCAACGGGGGTGAA 1378 29 100.0 32 ............................. GCTTCAAGCTCCTTGATGTGCTTGGCGGTCTT 1317 29 100.0 32 ............................. TAACCTCAGTGGCGCGGGATATGTTTTGTCGA 1256 29 96.6 32 ............................T GGGGTTTATGATTTGGGTTCTGGGATTGGGTA 1195 29 100.0 32 ............................. GCCACCGCCTCCTATGTCAATCCGGGCGGTGC 1134 29 100.0 32 ............................. CTTGTTCCTTTGACTCGCCGGCGCGCCTTGCC 1073 29 100.0 32 ............................. TTTTTTGTTGACACCTATAATATAAGGCGTGT 1012 29 100.0 32 ............................. CCGTGCAGTATGCCAACTATCTGGTCGTGTCG 951 29 100.0 32 ............................. CTTTGCCTCTGGCGTCCAATAAATCCACGGTA 890 29 100.0 32 ............................. CCCAAACGCAGGCAACCCGCGTTCAAACCCTA 829 29 100.0 32 ............................. GAGGCGCTCGACATGGTACGGGGTTTGTATGA 768 29 100.0 32 ............................. GTTGACGGGCCATGAGCACGTCAACACTGACG 707 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.8 32 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : GGACGCACGCGTTGGCCCCGCACGAGCGGGGATGATCCGTGGCCTAAGCAGGAAATTAAATCGACGTACTGGTTGGCCCCGCACGAGCGGGGATGATCCGATCTGCGGCTACGTGCCTCCGGTGAGGAAGGAGTTGGCCCCGCACGAGCGGGGATGATCCGCGTGAGGAAGCCGGCGTCGAACCCGTACCGCCGTTGGCCCCGCACGAGCGGGGATGATCCGAATTGGTCATGATTGGCTCCTTCTGGTCCAACGTTGGCCCCGCACGAGCGGGGATGATCCGTAACCGTGATACACAGGCTTGTTCACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGCCCCGCACGAGCGGGGATGATCCGCAGTGCGATGGTCTTTTTCATGGGTTCCTTCT # Right flank : AGGCCAGTGTGCCGTATTTCAGCGATGTCGACGTTGGCCCCGCACGAGCGGGGATGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGCTGCTGCGTAGTCCTTCCAAGAGTCTCGTAGTTGGCCCCGCACGAGCGGGGATGATCCGGAGGAGATGTGAGCGGACTGATACTTCCGTTCGTTGGCCCCGCACGAGCGGGGATGATCCGCTAGGTGATATGACGAAGGGTTCCTCCGTCAGGTTGGCCCCGCACGAGCGGGGATGATCCGAGGACACCCACGGAGTTTTCCCAGTAGATCGTGTTGGCCCCGCACGAGCGGGGATGATCCGTAAACCACCACATGACATCCCCTACGCCATTCGTTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3271-2937 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNZ01000096.1 Bifidobacterium longum strain 239-2 scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3270 29 96.6 32 ............................T GCCTCACGTTCGACCGAGTACAGGACGCACGC 3209 29 100.0 32 ............................. TGGCCTAAGCAGGAAATTAAATCGACGTACTG 3148 29 100.0 32 ............................. ATCTGCGGCTACGTGCCTCCGGTGAGGAAGGA 3087 29 100.0 32 ............................. CGTGAGGAAGCCGGCGTCGAACCCGTACCGCC 3026 29 100.0 32 ............................. AATTGGTCATGATTGGCTCCTTCTGGTCCAAC 2965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : CCGCAATCCTTCAACCCCTCCAGATCAGTCACAT # Right flank : TAACCGTGATACACAGGCTTGTTCACAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGGCCCCGCACGAGCGGGGATGATCCGCAGTGCGATGGTCTTTTTCATGGGTTCCTTCTGTTGGCCCCGCACGAGCGGGGATGATCCGCGTGGTTTTGTGCGCAAGAAGGATGCGGTTGAGTTGGCCCCGCACGAGCGGGGATGATCCGTCATGTCATCCATTGAACTCAGTCTAATCGGGGTTGGCCCCGCACGAGCGGGGATGATCCGCCGCCAGTTCGAAACTCAGATCCTCGTCCGACGTTGGCCCCGCACGAGCGGGGATGATCCGGGATAATCTTATCTACCACTATCGCAACAGCGGTTGGCCCCGCACGAGCGGGGATGATCCGTATTGCATGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //