Array 1 2668827-2670502 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEFR01000001.1 Escherichia coli isolate E.coli C142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2668827 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 2668888 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 2668949 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 2669010 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 2669071 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 2669132 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 2669193 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 2669254 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 2669315 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 2669376 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 2669437 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 2669498 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 2669559 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 2669620 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 2669681 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 2669742 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 2669803 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 2669864 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 2669925 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 2669986 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 2670047 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 2670108 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 2670169 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 2670230 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 2670291 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 2670352 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 2670413 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 2670474 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2696205-2697087 **** Predicted by CRISPRDetect 2.4 *** >NZ_UEFR01000001.1 Escherichia coli isolate E.coli C142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2696205 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 2696266 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 2696327 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 2696388 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 2696449 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 2696510 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 2696571 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 2696632 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 2696693 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 2696754 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 2696815 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 2696876 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 2696937 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 2696998 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 2697059 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //