Array 1 368646-366405 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000002.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 368645 37 100.0 37 ..................................... CAGCACCATCGGCACTTGGTTTTCCACCCGGTCGAAC 368571 37 100.0 37 ..................................... AAGGATGAGCTCGAACTCGAGGATGTCGAGGATGAAG 368497 37 100.0 36 ..................................... CATCGGGGCCACGTGGTAGCCACGCTCGGCCAACCA 368424 37 100.0 36 ..................................... TCGGGTTGATCGTCGGCACGCGGGCCGAGTAGCAGC 368351 37 100.0 36 ..................................... GTGTACGAGAAGGACGCACGAACGACCGTTGAGCTT 368278 37 100.0 35 ..................................... GGTGACGAGGTAGGTGAGGTAGGCGCTGGTTCCGG 368206 37 100.0 35 ..................................... GACGACTCGGACTGGGATGAGGCGATCTACAGCGC 368134 37 100.0 35 ..................................... GACGACTCGGACTGGGATGAGGCGATCTACAGCGC 368062 37 100.0 35 ..................................... GAGATGCTGCTGGACTACGCGGAACGCCACCCCGA 367990 37 100.0 36 ..................................... ACCCCGATCATGATCTGTCTGTCCCACAGGCGACGT 367917 37 100.0 35 ..................................... GATGTCGTTGCGGATGTCGCGGGCGATGGCCTCGA 367845 37 100.0 35 ..................................... GACGCGGCGCTGGCGTACGCGGAGTCGACGGTGGT 367773 37 100.0 38 ..................................... GGTGGGCCAGCCGCGGTCGGTGAGATACCGGATGGCCG 367698 37 100.0 37 ..................................... GATCGCGGTGCCGCTCGCGATGCTGCCGGGAATGTAT 367624 37 100.0 39 ..................................... GATATAGCTGGGTAGACCACCCTGGTCGTCGACCCAGTT 367548 37 100.0 35 ..................................... GGTCAGCTGGCAGGCGGACCGCACTGCGGGAGAGG 367476 37 100.0 36 ..................................... GACCTCGTGGAGGCACCGTGACCACAACAGCAGCTC 367403 37 100.0 37 ..................................... GACGGTGACCGCGGTGCCGGGCTGGCTCTCGTCGAGC 367329 37 100.0 37 ..................................... TGCCAATAGTGGGACAGTGGCTGCAGGAACAGGTGCT 367255 37 100.0 37 ..................................... GCGTGACCTGCTCGGCCTGCTCATGCGCTTGGAGTAG 367181 37 100.0 37 ..................................... CAGTGGTTCGAGGACTGGCCCCCGGCGGTGGACCCGG 367107 37 100.0 36 ..................................... GACCAGGGGCAGCGTGTCCCACTCGTCGAGCAGCCC 367034 37 100.0 36 ..................................... CGGCACGACTCCCAGTCCGAGTGGAAGGTCTGGGAC 366961 37 100.0 38 ..................................... TTGCGGGCGTCGTTGGCCCGTCGAGCGATGCGGGACAG 366886 37 97.3 38 ............C........................ GTGATCGCCGGACTCGCGGGCGGTGTGCACCAGCGGAT 366811 37 94.6 37 ............C....G................... CTCGGCCCGGTGTATGTGCCGGACGAGCTCGGCGCGG 366737 37 94.6 37 ............C....G................... CGCCGAGGTCGCATGGGCGGCTGACCGGCGCACAGCT 366663 37 91.9 37 ............C.T..G................... TCGTGGCACAGCAGCACCAGCGGCTCGTCGTCGGCCA 366589 37 89.2 36 ............C.T..G........G.......... GGGCTGGGGCACGACCGCATCGGGCAGCCGGTGCCA 366516 37 89.2 37 ............C.T..G........G.......... CTGACGGTGAACAGCTCCCCCTCGGCCGTCTACCGTA 366442 37 86.5 0 ..........................C..T..T.CG. | C [366412] ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 98.2 36 GTGGCGCCAGCCTTCCGAGGCTGGCGAGGATCGCAAC # Left flank : TCCGCTGTGGCACGTGCGTGTTCCGAGAAGCCGTGTCTGTCGCCATTGATGTTGACGCTGTGTGCGTACACCTCTCACCCCAGTCGGTTACCTCACTCACCGGAATCGGTCAGGAACGTATCGCGAACAACCGACAGCGATCACCCGGCCCTGCTTCGGGGGTGGGGAAGGACCGCAAGGCCACTTGGGAACCCCAAGCGTGTCCCGGAACCCCGGGAGGTTCTCAAGTGGATGCCCGGATCTGGTGGGAGAGCGAGAGATTGGAGGTTGAGGCAGCCGAGAGCGTCGTGGGGATGTGCCAGCATTGACCGCGGCGCGATGAGCAGAGAAGGGATGAGTTCGGGACGATCTCGGGTGAACGGAAGCGACGACTGCGCCGGTTTCGGAAGGGGAAGCGTGTGTCGACATGCCGTGAAGTTCCGAAGCGTTTGTTCGGCGTGTCGGTCACAGGGCTGTCACAACCGGGGGACGGCTATCCTGAAAACCCCTGCTCAATCGCG # Right flank : GGGGATTCACGGCGCCATGGTGACGAAGGTGTTCAGGTGTTGTCCGTCGGCGCCGTACACGTTGAGTTCGTAGTCGAGGACCTCGGATTCGTCGCGGCCGTCGTGGCGGACGGAGGCCGCCAGCAGGCGCTTGAGATGTTCTGGGCTGTCGGGGTCGGCTTCGGCGGTGAAGGCGCGGACGGTCGTACCGAGGCGACGGACTTCGAAGTGCAGCAGCCTCGGTCCTTCGGAAGCGGGCGCCGACTCCGCTCCGGGGGATTGCTCGTCCGGTGCTTCCTGCCGCTGCGGTTGTTCCCGGTCGTCCGCGGCTACGAGCTCACGGGCTCCGACCGCGACGGTCGTTGGCTTGCCGCGGGACGTTTCGGCCAACCCCCAGGTCTTGAGCAGTGTGACGGCTCTGCTGGCGGTGCCCACGGACACGTGGTGCTGGTCCGCGAGCTGCTTCGCGGTCGGCACCCGATCGCCGTCGACGAGCTCTCCGAGTCCGATCCGGTCGCGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCTTCCGAGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.40,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 376811-378313 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000002.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 376811 37 100.0 38 ..................................... GAGGGACTGCCCGACGCGCCGCCGAACCGCGCGCGGAT 376886 37 100.0 36 ..................................... CTCTTCGAAGGTCTCGTAGACCTGCCCGGCGACTAC 376959 37 100.0 36 ..................................... TGTCAAGGAGCCGAAGGCCCCGGAGGGCGCGAAGCG 377032 37 100.0 37 ..................................... CACTGTGGGTGGTCGATGTCGTGATCGATGACGACGA 377106 37 100.0 38 ..................................... TAACCCGCTGCCCACTACCTCCGGACGCTGTGGACGGT 377181 37 100.0 37 ..................................... CCCAGCGGGCTCGTGGCTTTTTGTCCTTGCGTGCCCA 377255 37 100.0 37 ..................................... CGGCACCACCGCCGGGCGGTTGCCCGTGCTGGGAACC 377329 37 100.0 36 ..................................... AGTTAAAGCACGAAAAAGACTGACAGGAGACGACAA 377402 37 100.0 35 ..................................... GACCAGGCGGCCCATCGCCTCAGCGTGTGCCGCGA 377474 37 100.0 38 ..................................... CTCGCCTACCTGTGGGTGCTGACGGCCCCGGAGGTGGT 377549 37 100.0 35 ..................................... GCGGATGTCGGCACGGAGCTGGTCGTCGGCGGATA 377621 37 100.0 38 ..................................... CGGCCGCTCCCCCGCAGGACGAAGCGGAGTCCGCGGGC 377696 37 100.0 35 ..................................... GATGCCCGGTCGGTGTAGATGTCGACCGTGACGCT 377768 37 100.0 37 ..................................... GCGTTGAGCCAGGCGAGCACGATCGCGTCGGTGCGGT 377842 37 100.0 36 ..................................... CACCGCCGTCGAGGACCGAGACGACGACACCCCCAG 377915 37 100.0 37 ..................................... GGGGAGGTAGGCGCGCAGCGCGTCGCGGAGACCGGCC 377989 37 100.0 36 ..................................... CCGATCAGCCGCGGTGGGCAGCGGCACCGGGTGGGT 378062 37 100.0 36 ..................................... GAGGCGAAACTGATGATGCGTACGTCCCCCAGCGTA 378135 37 100.0 38 ..................................... GGGCTGGAAGTGTCGCAGGACCGGTCGGTGGCGTGCCT 378210 37 100.0 30 ..................................... CGCACCGCCCGTGCCCGCAGCAGGCACCAG 378277 36 78.4 0 ...................T...A..-CC....T.GG | C [378307] ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.0 36 GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Left flank : GCCATCTGCGCGGGGATCAACCGAGCTACACCCCGTGGATTGCGAGCTGACCGTGGAACTGCTGATCACCTACGACGTGGACACAACCACAACGGAGGGACGTCGTCGGCTCAGGCACGTGGCCAAGGCGTGTGAGGCATACGGGAGCCGCGTGCAGAAGTCCGTCTTCGAGGTCGTGTGCCGCCCTTCCGACTGGATGCACATGAAGCAGCGACTCAGCGAGATCATCGATCCGCACGAGGACAGCATCCGCATCTACTCCATGGACAGAGGAAGCTTCGCATCGGCCGAGCACTTGGGGCAGTCACCACCGGCACCGCACGATACGCCGCTGGTGTTCTGAGTTTCCGGCAAGAGCATCAGCGAGTGACGATGTACGGCTTCGGAGGTGCAAGCGTGTCTCGACACGCCGCGAGGTTCCCAAGCACCTGCTCGGCGTGTCGGTCACGGGATAGTCACAGCGGCGAGGTGACTACCCTGAAAACCCCTGCTCAATCGCC # Right flank : GTCACCTCGAACTCATTCGGCGCGCAGGAACTCGGTGATTGCCGTGTTCCAGTCGAAGGTGGCCAGACCGTCGGTGCCGCGGCTGGTGAGGCTGTCCGAATCGAGCAGACGCACACCGGCATCAGCCAGCAGCCGGATATTGACCGGGTAAGCGGGGTGCCGACGCAGCACGGACTTCACGCAGGGCGCCAGGGTGATGGACACCTCGCCGGCCAGCAGCTCGTTGACCAGGCTGACCGCCAAGGTGTCGCTGACACCGGTGGCGACCTTGTTGAGGCTGTTGAACGTCACCGGCGCGACCAGCACGGCATCGGCCTTCGGCAACGGATCCTGCTCGCTGGGCATCCTGGGGTGCACACGCACCGGACGACCGGACTGCTCGGCGAGCTCCTCCCCGTCGACCCAGTCCGCGGCGGTGGGAGTCAGCACCACGCACACGTCCCAACCGGCTCGGCGCAGCAGCCCGACCGGTTCGGCCAGCTCCCGCACCGGCGGCGCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTCCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.60,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 924961-925111 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000002.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 924961 29 100.0 32 ............................. CACACGACACCGCGCGGTGTGGGCACGTCGCG 925022 29 86.2 32 .....C...............G.A....G TCCTGGGCCGGCATCCACTCGGCGCACTCCAA 925083 29 86.2 0 .....C..................TC.T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 90.8 32 GTAGGACCCGCGCACGCGGGGATGGACCC # Left flank : GGTGTTCCATCATCTGTTCCGATACGCGTACACACCTGACGAGACGATCGAACTGATCGAAACCGTCCTCACCGACCCGCCGAGGCCGATCTGCGAGATCTACGTGTGGGACCGTCCGTGCCGCTCGTTTCGCGACGAGGACGGCCCCACTTTTCCGGGAAACGGGCGGGTGCGCCTCGCCTGCCCTGCTGACCAACCGTGGGTGGCGCTGAACTACGTCAGCTTCGGACAATCGGGCGGTGCGCTCGTCGACAGCTACAACCCGCACGCCACCGAGGACACACCGGCGTTGCTGTTCGATCCCGAAGGGCAGCTGTTCTTCCCCGCTTCGGCCTCGCTGCCGCTGGACCGGGCACGCGAAGCCATCGCCGAGTACTGCCGCACCGGACAGCGCCCCACCTGCGTGCAGTGGCAGCCCGGCCAGTGGTACTGACCTCCGCCGCGGAACGGAAGTGGTTCCCGCAGCGGGAAAGCACTGCTAAGATCGCAGGTCACCGAGT # Right flank : CACCCGAGCCGCGCCCCGTCAGACCCCGGGGCGCGCTCCTCGGATCCCCCTCGCCTGCGGCGGCGCCGCGCCGCGCCGTGGGCCACCCGGAGCAGCGGCCTGGGCCGCGCGGACCCGCCCCACAGCACGGTCGTCTTCCGATTCGGTAAAAGCGCTCGTCAGGGGCGGGCTCGGCGATAGGGTTTTCACGAAACGGTCTCGCGTCAGCTGGGGGCAGAGACGCGGCGACGGCACCGATCCGGCGGCGCACCCACACTGAAGCGGGACGGTTCCTTGCTCGACTACCGAATAGGAGTGTCCCGTGCCCGAAGGCGCGCTGGAGGTCGACCGGATCTCCAAACGCTACGGGGACGTCGTTGCCCTGGACGAGATGTCACTCACCGTGCGACCAGGTGAGATGCTCGGATTCGTCGGCAGCAACGGCGCCGGAAAGACCACCACCATGCGGATCGCGCTGGGCGTGCTCGCCGCGGACTCCGGGGATGTCCGCTACGACGACG # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGACCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 467730-467517 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000001.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 467729 30 96.7 31 .G............................ GCCCGTGGCCGACGTTGTAGCTGGTCCAGGT 467668 30 100.0 31 .............................. GGCCGACGGCGCTCCGGTTGTCGTCCGACTC 467607 30 100.0 31 .............................. CTCATGCCCCACGTAAGGGGGCAGCACTCAG 467546 30 93.3 0 .G...................A........ | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GAGGTTTCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCGACCATCTCCGATATCTACCAATATCAGAAGTGATCAGAGAAGAGAACTTCCAATATCGGGGAGGCCCCCACACGTAAACGCCACATCCCGCCGATACCGAAAAGCACCGAAGGAAACCGAAGCGGCTGGCTGGCTACTTCACACGAACTGTGATTGAGCCCTGCCGACCACTGGGATCTGTTTTCGAAGTAGGAGCCAGTCGTTGATGGCAACGATGGTCGCAGGGCTGTCATATCCGACGGCGAGCTTGTCGTATCTGATGATCACGGCACGGTAGTGGTGCAGTGTTCCCGATCCACCCGGCCACGAGATCCGCGTAGCAGCCAGTGCTCACACGCTGCTACGAGACCAGCACGACCATGCTTGGCTACATCAACCACGCCATCGGTGGCAGACTGATCATCGATGCCCCTCCCCGCAGCTTCCGACGTCACGACACGCAAGCACCCCACAAGATCACAAAACGGTAAACCACTCTGATTTTCCCAGCACAAAAA # Right flank : CTGGATACGAGCCAGTCTGTTGGATTTAGATACGGTTTCCCCGCGCAGGCGATCTCGCCTTGGCCAGTGAACTGTCGTACTGGCTGCGGGAATGGCGCAGTCGCGACGAGCACCTGCAAACAGGGACACGGCATGGACGACACCACCGGCGAGGGCCAGCTCGCCGAGCTGGCCGAGGACCTCGACTGCGCCCGCCTGGCTGCCGCCGCGGCGGTGGGCACCACGTTCGCCTCGCAGGCCCTGGTCGGCTACGGCGGACGCTCCGCGGTGCATCTGGCCGAGCAGGCGGTGCTGAAGGTCTACACCCACCGGTGGCAGGAACGCTGCCACCGCGAGGCTGCCGGGCTGCGCGCGGCCGCGCACGCGACGGACCTGCGCGTGCCCGAGGTACTCGCCCACGACGAACGGGCTGGCCATCTGTCCTGGCTGGCCGCCACTCGAGTGAGCGGCACCCAGCCTTCACAGCACGAGCCCAGCACCACGGCGATCCTCGGTCAGGT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTTTCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.00,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 478389-477630 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000001.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 478388 28 100.0 33 ............................ CTCCCGCTGGAACCGCTGCCGCTCCACCTCAAC 478327 28 100.0 33 ............................ CCACCTGCCGTTCTCCCCCGCTAAGGAAGGACC 478266 28 100.0 33 ............................ CACCTGCGGAGTGTGGCGCCCCGACATCGGCAA 478205 28 100.0 33 ............................ CGGGTCGATGTACGTGGCCGACAGCGATCCCAC 478144 28 100.0 33 ............................ CCCAGGGCGGCGCCGACGGCACCACTGCCCCGG 478083 28 100.0 33 ............................ TACACGCCCCAAAGTGCGAAACCATGCACCAGT 478022 28 100.0 33 ............................ CATGTACGCCGCCGGTGAGCTCATGCAAAACGC 477961 28 100.0 33 ............................ GAGACCGTACGACGCCGATCCTTCGACATCTCC 477900 28 100.0 33 ............................ CAAGAGAGACGAGAGAAACCGGACTCCCGAACA 477839 28 96.4 33 ...............A............ CATGCGTGACCAGATCGTGATCGAGCCGACCGA 477778 28 100.0 33 ............................ GCTGGAGACGCGTGGCTGGTGCGGGCCGAGAAC 477717 28 100.0 32 ............................ CCCCGGTTCCCGTAACGGCAACGGCCGGGCAG 477657 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 33 GGTTTCCCCGCGCAAGCGGGGGTGAGCC # Left flank : ACAGCAACTCTTCTCCCCCAACAACTGTTCCCCAACGGGGTGAGGCGTCTGCTGGTGGTGTTGATCAAAGCTCAGCGAACGGTGGCTTCGTGGCAGTCGGACAGGCGTTCGTAGTCGCGGAGACAGCGGCAGCGCTAACTGGTCCAGCCCCCCCGGGGGGCTTTCGACGACCCAGCGGCACGGAAAGACGATGGAACCAGCTTGACCAGCGATTTCGACGATGGTCGCGGTGTCTTCATGGTAGACGGCGAATTCGTCATACCTGACGACCACGGTGCGGTGGTGCAGTGTTCCCGAACCACCCGGCCACGAGATCCGTGTAGCAGCCAGTGCTCACACGCTGCTACGAAACCAGCACGACCATGCGGCTACACCAACGACATCATCGATGGCAGACTGATCCTCAATGCCCCTACCCGCACCTTCCGACACCACGACACGCAAGCACCCCACAAGATCACAAAACGATAAACCACTCTGATTTCCCCAGCACAAAAAGG # Right flank : GATCTGCGCGACGGTGATTGGGTCGCACGGGCCGGATTCCCTGCAAACGGGGATGAGCCCGAGCAGACAGCGCGGGAAGCCGCCCAGTGGAGGAACTCCCTGCGCAAGCGGGGCAACTCTAAGACCGTGTCTCGGGAAGAAGCAGTGTCAACTCTGGTCCCCAACCTTCGGATTCCTCGGTCGGTGATGCGCGGTGGCGGTGAAGGGCGGGGCGCCCTTCACCGCCACCGCGGTCGGTATGAGCTGCGGCTGCGATGCCGGCGGCGCGGCCGTACGGAAGACCTATGAAGCGGCCTTACCGGGTGCGCAGCATCCCGATCGCTCGATATGCGGAGTGGCGGACTTGCACCGTTCGGACAGTGCGGGATGGCACCCGGTGCGAACCGGCGATCTATGCAGCAGGATCGTGGTGCGTGTCCACCCACGGATCGCTTCAGATCCGAGCACCGGCGTTCGCCAAGCGAGCCGTGTCCACTTTGATGGGATGCTCAGCTGGCAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 496429-495546 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000001.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 496428 28 100.0 33 ............................ CTGGAACCCGAACCCCCCACCAGAATCCGGGAT 496367 28 100.0 33 ............................ TATCAGTTACTACGCCGGAATCGTCCGGGATAA 496306 28 100.0 33 ............................ CCTGATCGAAGAACTCACTGAGGTGGACCGGCA 496245 28 100.0 34 ............................ CGAAGCGGTGCACAACGACGGGACGGCCCCGGAG 496183 28 100.0 33 ............................ TTCACCTGGTCGTGAAGTCGGGAAGGGGTAAGT 496122 28 100.0 33 ............................ GGCTGGGATCGGCTCCGTAGGCAGCGACCGCGG 496061 28 100.0 33 ............................ GCGCACCGGCATGCCCAAGCCTGCGAGCTGATC 496000 28 100.0 33 ............................ CAGCCCCGGCACGAGCCAGTTGTACGAATCCTC 495939 28 100.0 33 ............................ GTCCCGTGGCGAGGCCCACCCGTTCGGACTCCG 495878 28 100.0 33 ............................ CAGGCCGGACGGATCACCAAATCCGGACACGGC 495817 28 100.0 33 ............................ CCTGGCCACCACGGTGCTGCACTCGACCGATGC 495756 28 100.0 33 ............................ CTGCGCGAGGCCCGGCTCGAGCGCCGGCGGTTC 495695 28 100.0 33 ............................ CTGGATCAGCCCAGCAAGCGGGGATTTGCCCTG 495634 28 100.0 33 ............................ GGCTCGGACTACGCAGGAGAGACGATGATTGAG 495573 28 71.4 0 .............G.....A..CACCAA | ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.1 33 GGTTTCCCCGCTCACGCGGGGGTGAGCC # Left flank : CTGCACAACACCGCCGTGAATTGAACAATTAGCGTTGGAACGTCAGCCTGCCCCCAACGGGGTCACCTGACCAAGGGTGGAGTGAAATGCATAGTCGATACTGAAAAGCACCGAAAGGGATCGACACGGCTGGCTGGTTGCTTCTCACGAGCTCTGGTTGATCTCTGCCGACCACTGGGGTCTGTTTTCGGAGTTGGAGCCACTCGTTGATGGCAACGATGGTCACGGTGCCTTCGTGGCAGACGGCGAGTCTGTCGTATCTGACGACCACGGCGCGATGGTGGTGCAGTCTCACCGAATCATCCGACCACAAGACCGCGTAGCAGCCAGTGTCCACACGCTGCTACGAGACCAGCACGACCATGCGGCTACACCAACCACGCCATCGATGGCAGACTGATCGTCAATGCCCCTACCCGCATCTTCCGACGTCGAGGCAAGTGAGCACCCCACAAGATCACAAAACGGTAACGCACTCTAATTTTCCCAGCACAAAAAGT # Right flank : CTCATCAAACACAACAGCTAGCAGTTTCCCGTGGTGGGAAACCGCTCGAGGACGTGCCAGGTGTAGTGGTGATCGGCGCGGGTGAGTTCGACCAGGCGCAGCTCAGTGATGGTGATCTCGACAGGAGGCAGTGCCCGTGCCCGGCGCACAGAGCGAATGATCTCCTTCGGTGACTGCACCCGATTGCTGTAGGCAATACCCACATGGGGTCGGTACATCCGCAGCGGGTCGATGTCGGCATGGCCCGAGGCCGTCGACACCGCGCGATACACCCCAAGCAGTGGAGACCACGGAGCGACGCTGAACCGCACAGCTCCCGAAGAACCGGCCAACGGGATCAGTTGCAGACGAAACGGCTCGATCCCACGGCAGTGTTCCCCCACGGCCCTGGCCGCGGCCCGCAACGTCGGCACGGGCACCTCATCGACATAGCCCAGACGGCGCACGGTCAGGTGCAGACTCTCCGGCGGAACCAGATCGAGCCCCTCCGCGGGCAGCAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCCCGCTCACGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 1620660-1621134 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000001.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1620660 37 100.0 38 ..................................... AGCTCGAGTGCATCGTATCCAGCAACCGCTAGACGGAG 1620735 37 100.0 39 ..................................... ACGAACATCGAGCTCATGAGAAGAAAAATTTGCCGAAAA 1620811 37 100.0 30 ..................................... AGAAGAGGGTACCTAAGACTTCCTATTCGT 1620878 37 97.3 38 T.................................... CCTCGGCGAATGAACCCTCTTGGGGATTCCCAAAGAAC 1620953 37 100.0 34 ..................................... TTCACCGCTTCCAGCGATCGATATCTTCGAGAAC 1621024 37 100.0 37 ..................................... TGCCACCAGATGCGCCACGCCCCGGGGGTGTGGTTTT 1621098 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 99.6 36 CCCGCAAGACCTCGCCCGACGGACAGGGCATAGAAAC # Left flank : CGTCGGCGAGGAGCAGCTTCGGGCCATCACCGGGATGGTCTTCCTGCACGACCTGGCGGGTGAGACCGTGCGGACCCCGGTCTCGGCGACCATGGAGCAAACGGGGTTCGTCGGCACGGTTCGGCTGGGTCTGACCAGGAACGCCGAACGTGTCACGCGGGGTCTGTTCGCGGCCCTGATGCGCTTCACCGCCGTGGCCGGGGTCGGGGCGCAGACCACCCACGGCTTCGGCGGTGTCCAGCTGGAGGAACTCGATCCGTGAGCGTCGCGGTGGCCACGGGGTGCGGGTCCGCCCCGCTCGCGGGCGCACCCCGACCGGTACACGACGTCGGCGCGCGGGCCGGGAATCGGCTCGGTCCTCGCGAGCTTCATTCGAGCAGGTCACAGGCCTGCTGAGCCAGCGAGCGACAACGGTGTCCGGCCGTTCGCTGATCACTCTTGTCGAGGCCCTCGCAACCCGCTACGATCACGCACGTCAGCCCCCACCCACAACCACATCC # Right flank : CGGAAGCACGCACCTCTTCTTCAGTGTGGCCGACACCCCGCAAAACCTCGCCCGACCAAGAGGAAACACACGACCTCAGTGACCGTTGAATCGCGATTCTGTGCGACTTCTTTTTCAGGGGATGGTCATGGGAGTTCTGTATTCGCGCGCGTTCTCGCAACAGGCGCTGTTGGAAGCGTGGGAGGAAGTTCGCGATGCCGCTCGGGAGGACGGACGTCCCAACGAGGAGGTGGAGCGGTTCGAGGCCCACGCCGCACACTCGATCAGCGATCTCGCCGCCGAGCTGAGCGACGGAACCTGGCGTCCGTCACCGGTCCGGCGGGTCGATATTCCGAAGTCCTCCGGCGGGACGCGCCGCCTCGGCGTTCCGGCGCTGGTCGACCGGATCGTGGAGCGTGCCCTGCTGGCGGTGCTCGATCCGGAGATCGATCCGCTGCTGTTGCCGTGGAGTTTCGCCTACCGGCGCGGCCTGGGCCCGAGGGACGCGGTTGACGCGTTGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAAGACCTCGCCCGACGGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 5 1623608-1623860 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000001.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1623608 37 100.0 34 ..................................... TGCGAGGAGGCGTTTCCTTCCCCGCCTATCATTT 1623679 37 100.0 37 ..................................... AGCCGCAGTTCCTCTTGCATCCCGAGTTGGGGAGCAT 1623753 37 100.0 34 ..................................... GGTCGCGCCACTTTTCCCAGATCGTCTTGATGAT 1623824 37 89.2 0 .T..A...T.....................C...... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 97.3 35 CCCGCAAAACCTCGCCCGACGGACAGGGCATAGAAAC # Left flank : GTATCGGGCCTTGCGGTGGAAGTGAGGACGCCGTGATCGTTCTGGTGACCTACGACATCGTCGACGATCGGCGCCGCGACGACGTCGCCATGCTCCTGTCGGGCTACGGCCCCCGCGTGCAGCTCTCGGTGTTCGAGTGCGATGTGCGCGACCAGCGCGAGCTGCGGACACTGCGCGCGAGCTTGCGGGAGCGGATCGACCCGCTGGAGGACCAGGTGAGGATGTACCCGACGACTTCCCAAACGTTCAACGAGCGCTACGTCATCGGCGCCCGGACCGTCGAGGAGCGCGCCGACTACTGGATCGTCCGATGAGCCGGTACGGATCAACTCTGTTGGCACCCGAATCGGGGTCAGTCCTCGCGAGTGTCGTTCACGCAGGTCACAGGGTCACTGCGACAACGAGCGACAACGATTTCCGGCCGTTCGCTGATCACTCTTGCCGAGGTGCTCGCAACCCGCTACGATCACGCACGTCAGCCCCCACCCACAACCACATCC # Right flank : CTCTTTCAGCACCGCCCGTTCCTCGTGCGAAAAGAAGGCGCTCGACGATCTCGTCCGTCGTCAGGATGGAACGGCCAGTCCTGGACGATGATCCGGACGCTCCTCCTGGAAGCACGCGGCGTGTTCCGGAGTCGGTTTGGCCGTGCGGTCGAGAGGTCGGGTTCGATTCACGTGGAGAGTGATCGCGCGGACTTACCGTGTCTCCGCCTCGTCGGAGGCGCGAGTCAGCCGTGGGGCAGGCCGCGTTCTTTCGTGCGCTCCGTGACTCGTGTGGAGGAGTGATGCCGGAGATTTCCCGTACCGCACCGGAGTCGGCGCCGCTCAAGTCCGGTGAGGTGGACATGACGACGCCGTCGGCCGCCCGCGCCTACGACTACTACCTCGGCGGCAACTCGAACTTTCCGGTCGACCGCGAGTTCGGCGACCAGGTCCTGGAGCACGTGCCGTTCGTGCGGGACTTCGCACGCACCAACCGGGCGTTCCTGCGCCGTGCCGTGACG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCAAAACCTCGCCCGACGGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 1625270-1625605 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKO01000001.1 Actinopolyspora saharensis strain DSM 45459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =========================================== ================== 1625270 38 100.0 35 ...................................... ATCACTGCGACGTAATATGGAATGTTGAATATTCC 1625343 38 100.0 43 ...................................... CAACGATGTCATGGTGGATCCTTCGGCAGGGGGGGGGGGGGCA 1625424 38 97.4 33 G..................................... TGCTCTTAATCTCGACCTTCCAAAGATCGCTCT 1625495 38 100.0 35 ...................................... AGAGTTGTATCGAGAGAACCTCCCTTCGACAAAGA 1625568 38 92.1 0 A.....................G.............G. | ========== ====== ====== ====== ====================================== =========================================== ================== 5 38 97.9 37 CCTCGAAAACCCTCGCCCGACGAACAGGGCATAGAAAC # Left flank : CGAACAGCTGCGCGAGCAGGGCCGGGACCTCGAGCGGATGTACGCACGGACACCGAACCCCGGCTACTTCCGCGACCGCGCGGAGGTCACCGCCCTGCTCGACGGCTACGAGATCGTCGCCCCCGGGCTGGTTTGGGCCCCGGAATGGCATCCCGAGCACGAACAACCGAGCGACCCCGCCACCACCGCCACGCTGGCAGCCGTGGGCCGCAAGCCGTAGCGACGAGCGTGTCCAAGCCACCCACGCGCAACGAGCACCACGCCAGCGGGACCCGCATCCTCGAGGAACGCGCCGACCACCGGATCGTCCGATGAACCGGTACGGATCGACTCCGTCGACCCCCGAATCGGGGTCGGCCCTCGCGAACGTCGTTCACGCAGTTCACAGGCCTACTGAGCCAGTGCACGGCGACGGCGTTCGGTCGGTTGCTGATCTAGCTTGCCGAGGTACTCGCAACCCGCTACGATCACGCACGTCAGACCCCAACCACGACCACATC # Right flank : CTTCAGGACTCGACCAAAGAGGTAGTCGAAGTCTGCCCCCCGCAAAGCCTCGTCCGAGCAAAGAGAGCTCAAGGGAGAGCGCCGGATTCATCCAGCTACGGGGAAACGTCTCGGTGCGGTTTTTCGGCGACACGGACGGGAGGCCGCCCCAAGAAATCGGGAAGTGCGGCGAACCCGTTCGGTCGCTGAATCAGCACAGCAGCTGCCGATCCCGTCCCTGCCGCACCGATGTGGACTGAGCGACGTCGGCGATCAGCTCGCGAGGCCAGAGGGGCCGAGGTGGCCGTGCCCACCCCTCCCCCGGTCCAGGGCGCGGCCGCCCGGGAATTCCGGGAGCACCGGCGACCTCACACGCTCGGCACGCGTCCATCGGCGCATCGGACCGCCGAGGGGCTCACCGGCTGCCGCGGAACACCTCCCGTATCGGGTGAACCGCGCTGAACTACCGTGGTGCACGTGGTCGAGCAGGTCCTGACGCAAGCCCAGTGGCGCGCACGCGC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCGAAAACCCTCGCCCGACGAACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //