Array 1 8827-7539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTQB01000014.1 Pseudomonas aeruginosa strain AZPAE14967 AZPAE14967_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8826 28 100.0 32 ............................ AAAGAGCGGGCGGCGCTATTTGTCGTGACGAG 8766 28 100.0 32 ............................ TTGATGCTGGAGCTGCAATCGTGATCGCCTTG 8706 28 100.0 32 ............................ TGGAGGCAGGCGTGGCCAACTGCGGAAGCGAT 8646 28 100.0 32 ............................ ATGGTTTCGACCGCGTATTCAGCGGTGAAGCC 8586 28 100.0 32 ............................ GTGCGCGGCTCAGGCTCGACCTGGCCGGCACA 8526 28 100.0 32 ............................ ATGATTCGCATAAATCAAGCTCAGCGTGGCGT 8466 28 100.0 32 ............................ AAGGTGCGCTGGTCGAACCTGGCGATCAGTCA 8406 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 8346 28 100.0 32 ............................ TTACGGAGCCTGCCCATCATGCCCTTCGACGA 8286 28 100.0 32 ............................ TTCTCGAACAGCGCCAGGTCGATGCCCTTGGC 8226 28 100.0 32 ............................ TTGTGGGCTCAGATTGAGCCGATCTTGAAAGC 8166 28 100.0 32 ............................ TCCACCTCCTTTTCCCAGGCCTTGCGCAGATC 8106 28 100.0 32 ............................ GTCAAGCAAGCCAAAGCACTCTACGACGCCGG 8046 28 100.0 32 ............................ GCGACTGGGACGTTGTGCTGCTGCAACTGACC 7986 28 96.4 32 ..................C......... TGCACGGGTGCATTTGCTGCTGGGGTGCATTT 7926 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 7866 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 7806 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 7746 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 7686 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 7626 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 7566 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1768-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTQB01000015.1 Pseudomonas aeruginosa strain AZPAE14967 AZPAE14967_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1767 28 100.0 32 ............................ ACCATGAATTCCACGAACTGGAATATTTGCAC 1707 28 100.0 32 ............................ TCGGGGAAGAAGCCGTACAACAAGGACTTCTT 1647 28 100.0 32 ............................ TTGAGCCATTTCAGTCTCAGTCTCCTTACCAT 1587 28 100.0 32 ............................ CGCAGCAGCGGCTTCTAGCGCAACGCTATTCA 1527 28 100.0 32 ............................ ATCCGGACGCACGCCCTGAAAGCCGGCGATCA 1467 28 100.0 32 ............................ ACAGCCGGAGTTGACGACGACCGCGCCAGAAA 1407 28 100.0 32 ............................ TGAAACGCGGGTGATTGGAGTGAAACAGCCCA 1347 28 100.0 32 ............................ AAGGTCCTCGACTTCGCCGACTTCGACGTACA 1287 28 100.0 32 ............................ ATTACCGCCGGGGTGGCGGGGCGCATTGCTTT 1227 28 100.0 32 ............................ TGGGTGCCCGATGACGGGGCTGATGTCGACGG 1167 28 100.0 32 ............................ AAGGTTTTCGTGCGCATATTCAATCCGGGTAG 1107 28 100.0 32 ............................ GTACCGAGTCGCAAACCGTTCGCCGTGCATTC 1047 28 100.0 32 ............................ AACCGAAGATGACCGACAGGACGGCGATACCA 987 28 100.0 32 ............................ ACGTGCTTGCCACCGAATCCGCGACCCGTACT 927 28 100.0 32 ............................ TGGCAGGAAGCCGTCATCTCCCCAACGACTTG 867 28 100.0 32 ............................ TGGACGGGGCGGACCAGGTCCAGGCCGGCGGC 807 28 100.0 32 ............................ TCAGCAGCAGGGAACCCGCGTGACCGTTGTGT 747 28 100.0 32 ............................ ATCGGGCCAGCTCCTGCCGGCAACGCCGGCGC 687 28 100.0 33 ............................ CCAGAACTGGCTGAAGCGCCGAGAGGCAGAGTT 626 28 100.0 32 ............................ CTCTCGCGCTGGGCGCAGCAACGGTCGACAAG 566 28 100.0 32 ............................ ATGCGGAGCAGGTAGCGCACCCACTCCTGCAA 506 28 100.0 32 ............................ TTGTTGCGTTCGCGCTCGTCCAGCAGTTGGCT 446 28 100.0 32 ............................ TGATCTGCGCGGATGCTTTCTCTTTCATCAGG 386 28 100.0 32 ............................ ATTCCGAATGCCGCCCGGCCAGTCGGTGCCGA 326 28 100.0 32 ............................ AGGCGGGCGAGGGCGGTCTGGGAGAGCAGGCC 266 28 100.0 32 ............................ ATGATGCTGTCCCTCGGGATGTTCGTCTTCAG 206 28 100.0 32 ............................ GATCAGCGCGCCGGCCTCATGCGGCGCTGGCA 146 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 87 27 92.9 0 .....................A..-... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAAGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ATGTCGCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGGGTTCTACCCCGTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 66443-65394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTQB01000019.1 Pseudomonas aeruginosa strain AZPAE14967 AZPAE14967_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66442 28 100.0 32 ............................ AACATGCTGGGCTATGTGGGTGTGCCTCAGGC 66382 28 100.0 32 ............................ GTCCTGCAGACGATCAAGCCGGGTGCATCGAG 66322 28 100.0 32 ............................ TGCGGAATGCCGAAGAACTGGACGAACCACAG 66262 28 100.0 32 ............................ TCGCAGTTTGTCGTACATGGCGAAGGCGTCTG 66202 28 100.0 32 ............................ AAGAACAGAGCGGCCATCAGCCAGAAGTAGGG 66142 28 100.0 32 ............................ AAGAGTCGCTGGAGTGGTTGACCGAGCTGCTG 66082 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 66022 28 100.0 32 ............................ ATAAGGCTGTCGTCACAGCGCTGCATGGCTGA 65962 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 65902 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 65842 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 65781 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 65721 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 65661 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 65601 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 65541 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 65481 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 65421 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTCCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //