Array 1 82833-84018 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSC01000006.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4382 NODE_6_length_210326_cov_4.06595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82833 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 82894 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 82955 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 83016 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 83077 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 83138 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 83199 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 83260 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 83321 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 83382 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 83443 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 83504 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 83565 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 83626 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 83687 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 83748 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 83809 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 83870 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 83931 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 83991 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100688-102303 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYSC01000006.1 Salmonella enterica subsp. enterica serovar Newport strain BCW_4382 NODE_6_length_210326_cov_4.06595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100688 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 100749 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 100810 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 100871 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 100932 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 100993 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 101054 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 101115 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 101176 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 101237 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 101298 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 101359 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 101420 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 101481 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 101542 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 101603 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 101664 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 101725 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 101786 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 101847 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 101908 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 101969 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 102030 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 102091 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 102152 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 102213 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 102274 29 100.0 0 ............................. | A [102301] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //