Array 1 26821-26330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHVA010000136.1 Puniceicoccus vermicola strain JCM14086 Gn_994_40519_2591874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26820 31 90.6 33 ...........G-....T.............. GATCTGTCAAGGTTATCGCATAAACCCACAAAC A [26816] 26755 32 100.0 33 ................................ GTGTAGCTCTTGCCGTTGACGGTGGCCGATTGC 26690 32 100.0 33 ................................ CCTTGTGTGGGCCCTTGGGCACGATCCGGAAAT 26625 32 100.0 34 ................................ GGTCATTTGGATAAATCGAAATGCGCTCTCCGGT 26559 32 100.0 35 ................................ AAGCATTGCTTTTACCCAAGCGGGAAAAGCATAAG 26492 32 100.0 33 ................................ TCAACAGTGACATCCTCCTCATTAGGCGAAAAG 26427 32 100.0 34 ................................ AGGCAATACCGTTAGCCGCGGTGCAACGCGTGCG 26361 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.8 34 GTCGCCCCCTTCACGGGGGCGCGGATTGAAAC # Left flank : CCCGAAAAGCCCCAAAACCCTACGACCGAAAACAGAGATTTCCCAATTTTTCATACGCCCTATTAGAGGGAATTTCGGCGAGAGAGCCAGCCGCGAATGGGATCCAGGCATCGTCGAAGGCTCTCTCAATACACCTCTTTAGGGCCGCTCCTTCGCGGGAATCACAGGCAGGCTGCCTGTGGTACGAGTAAGAAGCATTGCGACTATTCATCCTTACCCTCCGAGAATAGCGAAGCCACGGTCGCAACTGCCTCCTACCGAGCTTAAAACGATACCCAAGCGAGCACAACTTTTCGGAATTGAGAGCCCCACAGATCTGCACTAAAGAAACCTCCATATTCTCAGGCAGTGAAAAAGAGGCCACTCCGCGAACCTCAAGCTCGCAGATTCGTGGCATCCCATCCACCCTGCGCTCTTTGACAGAAATACTATACTGAAAAACGAGGTTCTCGCATTTCCCTCTCGCAAAGCCCGAAAAACCAACTTGAAACTTAAAAGCT # Right flank : CAGAATCCCGCTCGCATGACAGACCACTCTCATTTGACAGAAGGACCAAGCATGAACAAAAATACACTGTTCTAATTTCTCCCTCATCAATGGGCCTTTACGATACCATTCACCTTCCCGAGCCTCTCCATCTACCGGATGGAAAGCATTCCATCGCCGAGATCCAGACCAAGAAATTTGGGAGTCTACTACGAAATTTTTCAATCGGCTCTGTCCTGGATGAATCCCCCGTCGCAACCGGCATCGTCGAGGAGTCTTGCTGGATCTCCATCACGAGAAAAGAAAACGAAGGAAAGCTCTATCCGGTCTATTTCGCGATCTGGCACCGCGTATTGACCGGAGTCTATCTGGACCTCCCCGAAGCCGAAACCCGACTGAGAACCGTTGATCGACTCGATCTGATCGCCTGGGTGGGCCAAGCCCAGCGTGAAGCCCGTAGTTGGCAAACTCGGTATCACCGTCTCTTCGCGGATGTACAAGAGTGGCAGAAAATTCAGAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCACGGGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGGGCGCGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17303-17929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHVA010000028.1 Puniceicoccus vermicola strain JCM14086 Gn_847_35014_3157072, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17303 36 100.0 30 .................................... TGGTGCTTACGATTTTAAGGCATTCATCCA 17369 36 100.0 30 .................................... CAATAATTGCCTATTATGGACCGTAAAGCA 17435 36 100.0 29 .................................... CGCGGCAACGGCTACCTCAGCGCCGCCGC 17500 36 100.0 30 .................................... GCTCCAGCTCCTCGCGCCGCGGATCATTTT 17566 36 100.0 29 .................................... CTGGATGTGGGGTTCCAGATGTGGCGGCC 17631 36 100.0 30 .................................... TGAGAGCATGGTCCGCACGTACGACGCCTT 17697 36 100.0 30 .................................... ACGCTAACCTACCGCGCGAAGAGATTCTCA 17763 36 100.0 30 .................................... GGGTATTCGCCGTTGAAGGGAAAGGTGACG 17829 36 100.0 29 .................................... GTAAAAATTGACGGCAAGATCATCTCTGC 17894 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 AGTCTGCCGGATTAAGCTTTGGATTCAAGGCAAAGC # Left flank : GCTACGTGACAGATTTCACTATGGAACGTATCGGATACCTCGGCATCGAGATGGACTTTCGAAACTGTTTGGAATCAGTCGTTCGCAGTTTCCGGCAAGCGGTCATGACAGGACAAACGCGAACCTATAAACCATGGACTCCCCCCAATTCAAAATGGGCTGGTTAGTTGTCGCTTTCGACCTGCCAGTCACTGAAAAGGAAGCCCGTAAAGCTTACACGGACTTTCGCAAATACCTGTTGCGGGACGGATTCCAAATGATACAGTTCTCAGTGTATGCGAGGCCAATGGTCACCCACTCCCGAATGCAGACCCATATTCGACGCGTGGAAAAAGAAATTCCACCCAATGGAAGCGTTAGAGCTTGGTATGTCACCCAAGCTCAGTGGCAACGAAGTCTCGTCATCTACGGCAAACCAGCCGAAAAACAGCCCGCAGAAGGCCTTCCGGAACAGACAATTTTTTGGTAACCCCTTCTTAATCAGCAGACTGGCGAAAGCC # Right flank : CCGCCTTCACCTGGCCGCCTCATCCATCATTGCCTCGCCATCCTCCAAGGATTCGGTCAACCATCGCAGGTGTTCGATCATCCGATCGACCCGAGCCAGTGTTCCAGCCCCGGAGAGAAGGCCCAGCTCCCGGTAGCTCATGCGCCCTTTGACCAATAGAATCGTTCCGGTGGTGGATCCGAGGTCCTTCAAAATCCGCTCGCACATGCTCGAAGTGATTTTCTCCGAGATCCAATCGGGCCGGTTGGTGGTGATGGTGATCCGCTTGTTAAATTCTTTCGTCGGGCCATTGACCTTGATCAACTTCTTAAACTCGCTCCGCTCCAGACGATTCATCCCCTTCTTCGAGCGAATCAAGAGAATGCAATCTTCGCGCAGCGCCGTCTGCAGGTGAACCGCCGTTTCGGAATGACGGGAATCTTTCAGCCCAGCCGACATGGTCTGCACGCTCATCTCACGCTCGTCCCACTTCCCGTAGACACTCGGAGATGCCTTAAACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTGCCGGATTAAGCTTTGGATTCAAGGCAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //