Array 1 157549-155809 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOP01000004.1 Salmonella enterica strain BCW_4903 NODE_4_length_412647_cov_0.381393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 157548 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 157487 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 157426 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 157365 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 157304 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 157243 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 157182 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 157121 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 157060 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 156999 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 156938 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 156877 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 156816 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 156755 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 156694 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 156633 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 156572 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 156511 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 156449 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 156387 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 156326 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 156265 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 156204 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 156143 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 156082 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 156021 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 155960 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 155899 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 155838 29 100.0 0 ............................. | A [155811] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 175600-174230 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOP01000004.1 Salmonella enterica strain BCW_4903 NODE_4_length_412647_cov_0.381393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 175599 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 175538 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 175477 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 175416 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 175355 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 175294 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 175233 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 175172 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 175111 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 175050 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 174989 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 174928 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 174867 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 174806 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 174745 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 174684 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 174623 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 174562 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 174501 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 174440 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 174379 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 174318 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 174257 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //