Array 1 23315-23081 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXSW01000009.1 Streptococcus mutans PKUSS-HG01 PHG01_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23314 35 88.9 30 -.....AC.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA TT [23306] 23247 36 100.0 30 .................................... CGTTCAAAACTTCTGCCCCAGCTGGCAAGA 23181 36 100.0 29 .................................... AGCATTCAAAGCATTTTTAAGTGCACTTA 23116 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAGGTTTTGGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTTA # Right flank : AATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAACCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 117843-115740 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXSW01000009.1 Streptococcus mutans PKUSS-HG01 PHG01_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 117842 28 100.0 33 ............................ TAACCTGTCGCTAGAAGTCTTGTCAGAAGTTAA 117781 28 100.0 33 ............................ TAGTCTTTATCTAGTCCACAAGCTAAAACTTTA 117720 28 100.0 33 ............................ TGCAAAAGTCAAAAATCAAAATCAAAAGCAAGC 117659 28 100.0 33 ............................ TAGAAATCAAGCGTGAATTGACAGCGCCTGTAA 117598 28 100.0 33 ............................ TACGGTTTAGTAGACTGTCAGTAGTTTTTTGAA 117537 28 100.0 33 ............................ TAAATTAATCAACAAAGTAAACGTTAACGGTCA 117476 28 100.0 33 ............................ TAAGAGCCGCCGCCTGAATTTAAAATCAGCACA 117415 28 100.0 33 ............................ TGCAGTTGACGCTCCACTTGCCAAAAACAAATA 117354 28 100.0 33 ............................ TATGAGCGCAAGCTTTGACGAAGCTAAGAACTA 117293 28 100.0 33 ............................ TATTAGTACTAGACGAAGTGGTGAAACGAATAC 117232 28 100.0 33 ............................ CGCGCCTTACGTGTTAAATGTAAGCACTGACAG 117171 28 100.0 33 ............................ TGCAGTCATGACTTTTCCTGCGGTATCAGCCAA 117110 28 100.0 33 ............................ TACGGTTTAGTAGGCTGTCAGTAGTTTTCTGAA 117049 28 100.0 33 ............................ CCACAATTTTATGAACCCGCAAAACTTAAAGAA 116988 28 100.0 34 ............................ TGAAAGCTGTTCTTGAAACTGAGTTAGAAAACGA 116926 28 100.0 33 ............................ TAAAAATGAGAAAAAAGAAAAAATATTCTGTAA 116865 28 100.0 33 ............................ TACGAGCAGGAACTCAAAGAGCGATATGAAAGA 116804 28 100.0 33 ............................ GACTTTACCTTTTTCACATTGCCAATCTAGCCA 116743 28 100.0 33 ............................ TTGTGATTTTGTCATTGTCTGCTAATTGTTTCT 116682 28 100.0 33 ............................ TAATTTACTTGCTTTACCAGCGTTGCCAATATC 116621 28 100.0 33 ............................ CTGACTTAGTTGGGTATGTAACATCAACTTATC 116560 28 100.0 33 ............................ TACTGTAGTGTACAACATCAGAGTTATTGGATA 116499 28 100.0 33 ............................ GCTGGTCTAATGCTTCTTTTTGAGCGTTAGTTA 116438 28 100.0 33 ............................ TGTAAAAATCCGTAATTTTTTACTTGACATTAC 116377 28 100.0 33 ............................ TCGGGTCGCTAATGCTGAAAAGCGCTTAACGAT 116316 28 100.0 33 ............................ CACGAATACATGTATAGCGTTAATTGACAGCGA 116255 28 100.0 33 ............................ TACTTTGTCGCGGTCAAAATTCTTAGAACCTTC 116194 28 100.0 33 ............................ TGCTTTCTGCGCATTCTTTGGTAAGTCTGCAAA 116133 28 100.0 33 ............................ TGTCTATCATGACCAGCTAAACGCCAAGTACCC 116072 28 100.0 33 ............................ TAGTAATCTTTCCCCAATAAATCCTTTGTCATT 116011 28 100.0 33 ............................ TGGATAATTTATATTCTAAATTATTTATTTCTG 115950 28 100.0 33 ............................ GACTTTACCTTTTTCACATTGCCAATCTAGCCA 115889 28 100.0 33 ............................ TACGGCATGCAATGCGTAGATATAGATACAGAC 115828 28 100.0 33 ............................ ACATTCTTAGCATAAAAAGAGCCAAGAATAGCA 115767 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 35 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //