Array 1 965-203 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTME01000002.1 Escherichia coli strain 10432wA10 NODE_2_length_543767_cov_55.257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 964 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 903 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 842 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 781 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 720 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 659 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 597 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 536 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 475 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 414 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 353 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 292 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 231 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96643-93625 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTME01000015.1 Escherichia coli strain 10432wA10 NODE_15_length_122526_cov_48.4054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96642 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 96581 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 96520 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 96459 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 96398 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 96337 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 96276 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 96215 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 96154 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 96093 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 96032 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 95971 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 95910 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 95849 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 95788 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 95727 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 95666 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 95605 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 95544 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 95483 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 95422 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 95361 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 95300 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 95239 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 95178 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 95117 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 95056 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 94995 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94934 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94873 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94812 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 94751 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 94690 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 94629 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94568 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94507 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94446 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94385 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94324 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94263 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94202 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94141 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94080 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 94019 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93958 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93897 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93836 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93775 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93714 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93653 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 50 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //