Array 1 162033-160661 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMG01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162032 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 161971 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 161910 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 161849 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 161788 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 161727 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 161666 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 161605 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 161544 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 161483 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 161422 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 161361 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161300 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161239 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161178 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161117 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161056 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 160995 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 160934 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 160873 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 160812 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160751 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160690 29 93.1 0 A...........T................ | A [160663] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180644-178540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMG01000004.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180643 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180582 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180521 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180460 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180399 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180338 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180277 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180216 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180155 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180094 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180033 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 179972 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 179911 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 179850 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 179789 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 179728 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179667 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 179606 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179545 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 179484 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179423 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179362 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179300 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179239 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179178 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179117 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179056 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 178994 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 178933 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 178872 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 178811 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 178750 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 178689 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 178628 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178567 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //