Array 1 199317-198929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEA01000002.1 Yersinia pseudotuberculosis strain IP33054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199316 28 100.0 32 ............................ TGTTGAAGACTGTGCCTCTTTAAATGTGAAAC 199256 28 100.0 32 ............................ AGATCGTTCAGGATGCAGTAAGCCAGCCATCA 199196 28 100.0 32 ............................ GTCTTCATCAACGTGATAAATCACTTCAGCCT 199136 28 100.0 32 ............................ GTCACGCAGAACCTATCACAATGCGGAATGGG 199076 28 100.0 32 ............................ AGATTGATAAGCCTCGCGAACCAGCTCGCCAC 199016 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 198956 27 89.3 0 .....................CC.-... | T [198931] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGATCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15584-17473 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEA01000017.1 Yersinia pseudotuberculosis strain IP33054, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15584 28 100.0 32 ............................ CTAACAATTTAAAATCTTCAGATTTAGTTAAA 15644 28 100.0 32 ............................ GTCATGATAAACTTGGATATTTCTATAAATAT 15704 28 100.0 32 ............................ ACCCATTAATAGAGGTATAAAGGGGATCATAT 15764 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGTAACGGTCAAG 15824 28 100.0 32 ............................ AAAGTATGGTTGAAATAATTGATAAACAAACT 15884 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 15944 28 100.0 32 ............................ CAAATAAGTATAACACTATAATTAATAATTGA 16004 28 100.0 32 ............................ TTGATGAGCCATGGTGTTACCTCCAGTTAATA 16064 28 100.0 32 ............................ ATCATCAGTAACGTGTGTTCTTTCCACAAGAC 16124 28 100.0 32 ............................ TAAAACGTTTCTAGAAGCCCAAGAAGCGCCAG 16184 28 100.0 32 ............................ GGTTTGGGATGGGTTGCAATATACTTGCATTC 16244 28 100.0 32 ............................ TTCTGGCGCTCAGATGATGAAGATGGTGAACG 16304 28 100.0 32 ............................ AAAAGTTAATTCATATCCATTCTCATAAGCAA 16364 28 100.0 32 ............................ ATTAAATCAGATTTATTAACCTCATCGCTATT 16424 28 100.0 32 ............................ AAGAGATTCACCGGCCATCAACCGGGCGCAGG 16484 28 100.0 32 ............................ CGCTGGATGTGAAGAGTTGCAGGGATGCAAGT 16544 28 100.0 33 ............................ CAGAAGCATTGATATCTTCGGAATGAAGCTTTC 16605 28 100.0 32 ............................ GCCATCACCAAGTTTCGAAATAATCTCCATTC 16665 28 100.0 32 ............................ TTCTGGCGCTCAGATGATGAAGATGGTGAACG 16725 28 100.0 32 ............................ TATGCAATACGCCATTGCAGGGTATCCCGCAT 16785 28 100.0 32 ............................ TAGGGGATGGATCAGGGCGGCGGTGAGTCGGG 16845 28 100.0 32 ............................ GGAATGCGCAGCACGGCATAACCAATTGATAA 16905 28 100.0 32 ............................ ATCGCTAACCGACGCATCATAAATCTTAGACG 16965 28 100.0 32 ............................ AACTGAAGTCGATGTTATCCAAGCTAAATATA 17025 28 100.0 32 ............................ GTAAGTCCGAATCATTAACAGCGAGGTAGGTA 17085 28 100.0 32 ............................ GGCGCACGATTAAACGAAGCGCTGGCCCTGAC 17145 28 100.0 32 ............................ GAACGAGAGGCGATATGCCAAATCCAAAAAAT 17205 28 100.0 32 ............................ GACGAATGGCCCGGCATCACCCGTTGGCCTGC 17265 28 100.0 32 ............................ AATGTAATCCGGCAGGCCGTAGACTTGCTGTT 17325 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 17385 28 100.0 33 ............................ GCCCAGGCGGCACTCAACGCCAGGGCGGGGACG 17446 27 85.7 0 ...................-A.A.C... | T [17470] ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTCTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAATGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //