Array 1 252013-250961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOW010000006.1 Enterobacter roggenkampii strain RHBSTW-01045 RHBSTW-01045_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 252012 28 100.0 32 ............................ TCCGATATATACTGGATATGCATACAGTAGTT 251952 28 100.0 33 ............................ AGCTCATGCAGTTGCAGCAGGTGCCAGCCAACA 251891 28 100.0 32 ............................ TTCCGGCGCGTCAAATCATGAAACAGGCATTT 251831 28 100.0 33 ............................ TCTACCGTTGCCGCTACCACTGGAACATAGAAT 251770 28 100.0 32 ............................ TTCCTGCATTATCACTGCGCTGTCAGTCGAGC 251710 28 100.0 32 ............................ GGACGGGTTAATAACGCTTCCGGATGGCAAGG 251650 28 100.0 33 ............................ AGCTACCGGCGACTACACCCAAACCCGCGTTTA 251589 28 100.0 32 ............................ ATCGGGGACACCAACAACAAAGAACAGGTCGA 251529 28 100.0 32 ............................ AGCTGGGTTCCGGATCGGCAACAGCAACAGAC 251469 28 100.0 32 ............................ CAAAAGATACCACCGGCTCCGCTGATTCCGCG 251409 28 100.0 32 ............................ TGACGCTTGAAGAAAACCGCTCAATTAACGGC 251349 28 100.0 32 ............................ TCCAAAAACGGTATCCGCTATCCGTTCATTAA 251289 28 89.3 32 ..G.T.......A............... ACGCAGCGCGAGCCAATTCCTCCTGTTTCCTT 251229 28 89.3 32 ..G.T.......A............... AAGCGCCTGGCGGGCGCAGAATTCATCACTGC 251169 28 89.3 33 ..G.T.......A............... ATTCTGTATCAGCCGGATAAGTATCACCTGGAA 251108 28 89.3 32 ..G.T.......A............... GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 251048 28 78.6 31 A.G........CA..C......C..... ATAGAAAATAAGGCCTAACAGTTCTCGCACC C [251023] 250988 28 67.9 0 ..G.....T..AA...A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 18 28 94.6 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGACACCGAAACGAAATGTGATTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGATCCCAATATGCTGCCGCACCTTACAGGGCTACTCCATGATATTGCGCATTCGATGGCTGCAGATGTCGTTGCGCCTCAACGTGCAGAAACGGTAGTTCACATTATTTCCTGAATGTAATTTGTGGCGTCGGTGACAGACCACCGTCGCCACTGGCTTGACCCTTTTTTTTGATGATTACGTAACTTATTGATTTATAGGATTCTAATTTACGAGTTAGAAAAAAGGGTTTTATGAGCGAAATTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCTTTTCA # Right flank : CTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 268171-266879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOW010000006.1 Enterobacter roggenkampii strain RHBSTW-01045 RHBSTW-01045_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 268170 28 100.0 32 ............................ CCAGTCATTGGCTGCAGTTTTCAGCAGTGACC 268110 28 100.0 32 ............................ AGTGACAAGGATTTCTTTGAACGCCTTGAGAA 268050 28 100.0 33 ............................ TGTAGAGATAAAGGCGGCCAACCCGGCCAGCAA 267989 28 100.0 33 ............................ TACAAAGGCCGTCGATGCCGTCTGTGTGTTGCT 267928 28 96.4 32 ....................G....... GTCACACGGTGTCAGTGATGCGTCGACAACGA 267868 28 100.0 32 ............................ AGAGACGAGGCTGAACGGCTTATCTCCTGCAT 267808 28 100.0 32 ............................ AGCTCATCCGAAAAGACATGGGCTTGGCAATC 267748 28 100.0 32 ............................ CGGAGGGGAAGCCATTACCCGGCAAAACCCTT 267688 28 100.0 32 ............................ ACGCCCTGAGTGGCAGCACTATGCCAGTAAAC 267628 28 100.0 32 ............................ AATAGGCCGGAACATTAATTTCGTTGGATGGA 267568 28 100.0 32 ............................ AGGGTCGATCCACTCGCCGCCGATCGCCTTGT 267508 28 100.0 32 ............................ TGATTCGTGCAGCCTAGTCTATTCCGTATAGG 267448 28 100.0 33 ............................ TGGCAGACCAGGAACAAGCGCTTATACATTGGC 267387 28 100.0 32 ............................ TGGCGGCGGCTGAATTTTTGCCGCTGGCAAGC 267327 28 100.0 33 ............................ AGGCCCCGGAGCTGTACGGGCTAAACGTCGCGT 267266 28 100.0 32 ............................ CCAATTCCCGCCAGGCGCAGGAGGCCGCGGCA 267206 28 100.0 32 ............................ AGCATCTGTCTTTTATGCGGTCGCTGCTGAAG 267146 28 100.0 32 ............................ TCCGAGCTGTAGCTGCTATTCCAAAGTGTTAC 267086 28 100.0 32 ............................ AATATGAACAATGCGATGCTCTGCAAGCAGAG 267026 28 100.0 32 ............................ TCTGTAACGCTTTCGGGCTTACGGCATAGCAC 266966 28 100.0 32 ............................ TGTGCAATCCTTTCAGGATTTCGATCACTTCA 266906 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTCATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGGTGGAATCTGTTCCGAGGGAAGGGGACTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGAGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGTTTTCACTTCTTCTTCGACGATAGCCATGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //