Array 1 63790-60220 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFT01000017.1 Vibrio cholerae strain N2722 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63789 28 100.0 32 ............................ ATTACCATTAATGGATTCTTCGGGTCGTGTTG 63729 28 100.0 32 ............................ ATCAAGTAGAACGGTTAGCTTTTTCAACTCAT 63669 28 100.0 32 ............................ TTTCTCAAGCTTCTGAAACGCATCTGCAATGG 63609 28 100.0 32 ............................ AATTTTTGCACCCATCGCACCCGCGAGAACAT 63549 28 100.0 32 ............................ TTTTTGCAATGCGCGCTCCAATGCTCATTTCA 63489 28 100.0 32 ............................ TAAAGAAAGTGGCAGTGCAAAACGGCTGGGCA 63429 28 100.0 32 ............................ TAATAACACTACTCATTTGCGAGTTAACAATA 63369 28 100.0 32 ............................ TTAGTGCCCTACGACACAGGCTACCAATTCGC 63309 28 100.0 32 ............................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 63249 28 100.0 32 ............................ TCTAGAGGCTGCATTGAGGCTTGCGCCATAGG 63189 28 100.0 32 ............................ TTACTTCACTTCAACAATGTACATAGGCTGGT 63129 28 100.0 32 ............................ TTAATGGCTTTCTGAGTGGCATCCTGAGACCT 63069 28 100.0 32 ............................ TTTTAGCCCTTCTTTAAAGTTGAGCGCGCCTT 63009 28 100.0 32 ............................ GGTTAGCGGTAGTATTTGTTTATCAGCGAGGA 62949 28 100.0 32 ............................ ATAACCTCAACCTGCTTGATTTCATGGATAAG 62889 28 100.0 33 ............................ AATCTATCGCCGATTGTTCTTGATACTCTGCAT 62828 28 100.0 32 ............................ GTCTGTCCTTCCTTTCTTGCGTCCGCTTCGCA 62768 28 100.0 32 ............................ TATCTCAGCCTGTCTAATCATCACCTCTCGTT 62708 28 100.0 32 ............................ CTCCAAAAAACCCTGTACTGCGGTTTCGTCCA 62648 28 100.0 33 ............................ CTCTAGGAATTGCTCCTGCTTTTCCTCTTCCAG 62587 28 100.0 32 ............................ TGACAATGCATTATTAAATAGAGTTAACCAAT 62527 28 100.0 32 ............................ CATCATCACAAGCTAACGCATACTCAACATTA 62467 28 100.0 32 ............................ TTTTGAAAACGTCTGGTAATAAAACTGCTCAT 62407 28 100.0 32 ............................ AGAAGGGGTCACTACTCATAGAGTTAGCAATC 62347 28 100.0 32 ............................ TTCACATGCTTTCTTGGTTTGGGAAAATCCGA 62287 28 100.0 32 ............................ TAAAAAGAAGCCCATTAGACAAGCATTTAACT 62227 28 100.0 32 ............................ CTTCGAGTTCGCTTTTTTGAGATTGAAGTCGT 62167 28 100.0 32 ............................ ACTTTTAATCACTCTCATAAAATCACCATGAA 62107 28 100.0 32 ............................ CTCATTTGTTCATGGCTGCTTTTACGCGCTTG 62047 28 100.0 32 ............................ TCAATGAATGATCGTCACGGCTTTATTACTAT 61987 28 100.0 32 ............................ TATTTAGCAAGCAGCGTCCTTAACGTTTTATC 61927 28 100.0 32 ............................ AGTCACCACTCGAGCAATCATTAAAGCAGGCC 61867 28 100.0 32 ............................ ATCAAGGCAATGGTGTAGCAGATGCCACTTTA 61807 28 100.0 32 ............................ GCAATCAGGGTTATCACACTGGCAGTAATATT 61747 28 100.0 32 ............................ TCTCGGCTTGGCTTGCTGCACTTCCGTCTATT 61687 28 100.0 32 ............................ TTTTTGTTGACACAGTTATCTCTCTCTGCACA 61627 28 100.0 32 ............................ TTTAGATACTAAGTTGTTTAGCTGCTGAACGG 61567 28 100.0 32 ............................ TGACAGCATCCAGCCTTCCATTGGTTAGACGA 61507 28 100.0 32 ............................ AAAAACCAAACTACCTGAAATAAAAACAGCGA 61447 28 100.0 32 ............................ TTCAATAGCTGACTTTGGAATAAAGATTGATG 61387 28 100.0 32 ............................ TGACTACGGTATCATCTTGCTCGGTCCGCTGA 61327 28 100.0 32 ............................ AGAAGGAACGTTTCCGGTAAACCCGCTAGAAA 61267 28 100.0 32 ............................ ACTATACCGTTACCTAGCAGCTACCGCGGCCT 61207 28 100.0 32 ............................ ATACGGTGAGACTTACTATTTTGATTCAGCCG 61147 28 100.0 32 ............................ TGTCGGTGCTTGGGAAGTCATGCGTGAAGACG 61087 28 100.0 32 ............................ TCGCAGGCGTTCATGTTATGAGGTTGATTGAT 61027 28 100.0 32 ............................ TTGCTACCATCGAGCTAACACTGAGAGCCGCT 60967 28 100.0 32 ............................ GTACCACGTAAAATTGCCCGCGATAATATCCG 60907 28 100.0 32 ............................ ACCAGGAGCATTAATACTACCGATAGTTGTTC 60847 28 96.4 32 ...........T................ TGTGGTTAATCTCGCTACTGATTTTATTTATC 60787 28 96.4 32 ...........T................ TTTGGGCTAAATTCGCGTCCAGTGGGTGTTAT 60727 28 96.4 32 ...........T................ GCCTTTTTGAATGCTTCAGCCGTGAGCCTATC 60667 28 96.4 32 ...........T................ TATTCCACAGTGACTAAAAACTGATTAGTCCC 60607 28 96.4 32 ...........T................ TTTAATGTGATTACTCATTTATTGCCACCCAT 60547 28 96.4 32 ...........T................ AAATAGCGAAGCGTCTGTACCAACCCTTTTCT 60487 28 96.4 32 ...........T................ ATACACAGACGAAATCATTAGGTGCATTGTAT 60427 28 96.4 32 ...........T................ ACGAGGAAAGCATTGAGGGTAAAGCAAGAGTT 60367 28 96.4 32 ...........T................ TGTATCAAGGATTAACAAAGTAAGGGGAAATT 60307 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 60247 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2232-2619 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFT01000044.1 Vibrio cholerae strain N2722 NODE_135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2232 28 100.0 32 ............................ AGAATCGTTATTGCGCGGCGGCCTGCAATGCG 2292 28 100.0 32 ............................ CCAATCGGGCGAGAGCAAATGAATATCCCAGT 2352 28 100.0 32 ............................ GTGGTCTTTCTCCTGTACTGCATGAGGATTAC 2412 28 100.0 32 ............................ ATCAACTGCGCAAAACAGCGCGTGTGTTGATG 2472 28 100.0 32 ............................ TTATCTATTTTGCTACAGTAGGTAGCTTGAAC 2532 28 100.0 32 ............................ ATTACTTGAGCCAGAGAACAGGCCTTTGAGTT 2592 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTAAATATTAGACCTGCGACTGTGCCAAGTCGTATTAAAACCTTATTTTTTGGTTGGTAGTAGTCTTCACATTAGTTGTTGCTCTGATGTTCGAGTATCGGCACATAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTACAGTTGTTGTGTTTGAGTTTGGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCCTGTGCCTTTTTGGACAAGATGAGTCA # Right flank : ATAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTTGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATGTACTCATCTGTAATATTGAAATTTAATGGAATTTTGTATGAATTTTAATGCAACTCTTCTTGGGCAAGCGATTTTCATTTTTGCGTTAATCATGCTTGTTCTCAGTTACATTTTAGGGAAAAGGAAAACTGAAACCCCAAAAACTACCGCGTTCATAGGTTTCTTGACTGCGTTAGTCCCACCGCTAGCTATTGTTTTTCTGATTGTTTTAATCCTAAAGAACGATGTGGCGTTGGCAAAAAGCGATATTGGACAATAGATATTGTTATTAAAAAAGTTATCAAAAATGAAGCTGAATACACGTACATAACAAACGCCTCAAGAGGGACTGTCAACGCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9832-10039 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSFT01000044.1 Vibrio cholerae strain N2722 NODE_135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9832 28 100.0 32 ............................ ATACACAGAAAGTCGGCCTTTCTGCTTCTATG 9892 28 100.0 32 ............................ AAACAGCATGTATTTGGCATTAAACCGATGCC 9952 28 100.0 32 ............................ AGTAGTTCGATTGCGCCTAACGCCTCGATGAG 10012 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTTGTGTATATGATGGCTTTTTATCGAATGTTGTTTGGCATAAATGCCTTTCGCTACCCCTTTAAATGGAAGGGTGGGCATCAGAAACACACACATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTTCGGTTGTGGTGTTTGAGTTTAGTGGTCATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAACCACTGCCGCCGCCATGTAATCTGTTG # Right flank : ATAGTTATAACTTTGGCATTTGGGGTCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGAGGTGGTTACGGCTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTATAGCCCTTAAATGAAGAAGTCAAATATGGATAAAGAGTTAATTACAGCGATAGCAAAAGACATTATTAATGAAGCTATCTTCGACAACTATCATATGTATATGTTAGTTATCGCTATTTCTGTGCTTTCGGCTATTTTAAGTTCGTTGTTCACATCATATTTCAAGAAACGTGGCGAGCACCTAGCAACTAAGGCTGATCTTGAGGATATTGTCGCTCATTTAGAGGCAACGACTTTAGCTGCGGAAAAGATAAAAGCGGATATTGCGAAAGATGTTCAAGAAAAATTAGATAAGAAAGTACTTTTTCGGGAAAAATTGGAAACAATTTTTAGTCACACATTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //