Array 1 6992-5305 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYRD01000022.1 Streptococcus agalactiae strain GCH50 22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6991 36 100.0 30 .................................... AAACAGTATTTAAAATTTGTGATATTTTAG 6925 36 100.0 30 .................................... TACAAATTCCTAAATAGCTAAACCCAATAA 6859 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 6793 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 6727 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 6661 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 6595 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 6529 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 6463 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 6397 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 6331 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 6265 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 6199 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 6133 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 6067 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 6001 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 5935 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 5869 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 5803 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 5737 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 5670 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 5603 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 5537 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 5472 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 5406 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 5340 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //