Array 1 16699-12107 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNCV01000004.1 Acinetobacter baumannii strain MRSN3941 MRSN3941_contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16698 30 96.7 30 ............................A. TTCCGCAACTCGCTACTTCCCTGATGCAGA 16638 30 96.7 30 .............................G GAAGATTTGCTTATGGCGTTCTGGAAAGAA 16578 30 96.7 30 ............................A. TGCTTAGTAATGCGCAAAAACGGTCATCCA 16518 30 93.3 30 ............................AG CAGAAGAACGCAGAAAAGCGAGAAGCTTAA 16458 30 96.7 30 ............................A. CTTGAAAGGCTTGAGCTTAAAGCTTTTTAC 16398 30 96.7 30 .............................A CAGCTGGCCGCGTATATAACGGCTCAGTAT 16338 30 93.3 30 ............................AC AACTCGATGTTGGGTATGCAGAGAGCCTTG 16278 30 93.3 30 ............................AA ACTTACACTTCTCAGCGTCAAACCATGCGT 16218 30 93.3 30 ............................GA TTACATCCACGAAAAGAGCTTTAATCAGGA 16158 30 96.7 30 .............................G GCAGAACTTTTCATGACGCTCATTCTCTAA 16098 30 96.7 30 ............................A. ACCTATCAACGTTAAACCAACGATTGCCAG 16038 30 93.3 30 ............................GA TGCAGAAGATGTTTTAGAACGTTATGACGA 15978 30 96.7 30 ............................A. TGGGATGTTATGAATATTCGACATTACCAA 15918 30 96.7 30 ............................A. CAAAATAGAGTTGGCCTTCCTGTTTGGCCT 15858 30 100.0 30 .............................. CAAACGCTTCAACCAGCCACGTCTTTGAAG 15798 30 96.7 30 .............................C TTCCGCCAAATTCTAGGAGGTTAACATGCT 15738 30 100.0 30 .............................. GTGCATACTTATTGCCGCCAGCAAGTAAAC 15678 30 96.7 30 .............................C CTTCGGGAGGTTTTCTTTTGGGGTGATCAT 15618 30 93.3 30 ............................AA GTTTCGGCCTAATGGATGCGGTCTTGAAAA 15558 30 93.3 30 ............................AA GGACTATCCGTCCCTTTGCCGTTTTTGTAC 15498 30 93.3 30 ............................AC CCTCGGGTGGTTTTTTATTGAGGTGATCAT 15438 30 93.3 30 ............................AG TGGCGCGTTCAAGCGTGCCATTGAAGCATA 15378 30 93.3 30 ............................CA GAAGTAAGTCTTGCAGATGCACGATCTAAA 15318 30 96.7 30 ............................A. CCGCCGATAAAACCCTTACCCGATACGCCC 15258 30 96.7 30 .............................C AGCTCCCGATTCAACATCCAACAACATGCT 15198 30 100.0 30 .............................. TGAAAGACTTGAACGTGGTCAAGTCCTCCT 15138 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 15078 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 15018 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 14958 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 14898 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 14838 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 14778 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 14718 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 14658 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 14598 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 14538 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 14478 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 14418 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 14358 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 14298 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 14238 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 14178 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 14118 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 14058 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 13998 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 13938 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 13878 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 13818 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 13758 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 13698 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 13638 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 13578 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 13518 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 13458 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 13398 30 100.0 30 .............................. CTCATCGTGAAGGTTTTGCAAATATGCCTT 13338 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 13278 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 13218 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 13157 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 13097 30 100.0 30 .............................. CAACTGTGTAACCAGATTTCGCTTTAAAAG 13037 30 96.7 30 ............................A. CAATGTAATGCTCAGGCGATGCCTTATCAT 12977 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 12917 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 12857 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 12797 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 12737 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 12677 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 12616 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 12556 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 12496 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 12436 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 12376 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 12316 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 12256 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 12196 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 12136 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 77 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //