Array 1 8582-9710 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRD01000032.1 Escherichia coli strain MOD1-EC5188 MOD1-EC5188_32_length_56514_cov_73.3779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8582 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 8643 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 8704 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 8765 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 8826 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 8887 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 8948 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 9009 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 9070 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 9131 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 9192 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 9254 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 9315 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 9376 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 9437 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 9498 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 9560 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 9621 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 9682 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9724-11155 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLRD01000051.1 Escherichia coli strain MOD1-EC5188 MOD1-EC5188_51_length_28428_cov_70.7469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9724 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 9785 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 9846 29 100.0 32 ............................. GCTTGCGAATGTGTGCCGTAGAACGTGCGTCG 9907 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 9968 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 10029 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 10090 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 10151 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 10212 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 10273 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 10334 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 10395 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 10456 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 10517 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 10578 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 10639 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 10700 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 10761 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 10822 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 10883 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 10944 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 11005 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 11066 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 11127 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //