Array 1 36780-37047 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCD01000007.1 Pseudomonas aeruginosa strain Pa792 K15_S47_R1__paired__contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36780 28 100.0 32 ............................ TGTTCCTGCTGGCGGTAGATCAAGAATTCTTT 36840 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36900 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36960 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37020 28 71.4 0 ....................NNNNNNNN | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTAAGAAAAACATCCAGCCCGAGCTGAGCGATATCCCCCGGTTCACTGCCGTATAGGCAGCTAAGAAATGCTCGCTGATGACCAGCCGCAGCGCATGGTTGTTCACTGCCGTATAGGCAGCTAGGAAACGCAAAGCCCCGCAGGACAATGACTTGATATCGTTCACTGCCGTATAGGCAGCTAAGAAAAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTTCACTGCCGTATAGGCAGCCAAGAAAGCAGTGATCGAGCGCGCACGGTCGCGCAAGACGTTCACTGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37298-37805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCD01000007.1 Pseudomonas aeruginosa strain Pa792 K15_S47_R1__paired__contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37298 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37358 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37418 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37478 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37538 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37598 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37658 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37718 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37778 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGCTAAGAAATGTTCCTGCTGGCGGTAGATCAAGAATTCTTTGTTCACTGCCGTATAGGCAGCTAAGAAATGTCAGAAGGGATTACCGCGGACCTGGTCGCAGTTCACTGCCGTATAGGCAGCTAAGAAATCAGGCTCATTTCGTTGTCCTCGATGCCCCGGGTTCACTGCCGTATAGGCAGCTAAGAAAGGGAGGGCATGTGATGCGAGCAGACGAGTACCGTTCACTGCCGTATAGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTAAGAAAAACATCCAGCCCGAGCTGAGCGATATCCCCCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 48399-46330 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCD01000007.1 Pseudomonas aeruginosa strain Pa792 K15_S47_R1__paired__contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48398 28 100.0 33 ............................ AAGGCGGGCGTACGAATAGCGGCGAGTCGGTGT 48337 28 100.0 32 ............................ AGTCGAAGTCACCAGTCAGAACCTCCCATTCC 48277 28 100.0 32 ............................ TAGTCGGGAGTCAGGCTTCGCCCCGTTCGATG 48217 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48157 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48097 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48037 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 47977 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 47917 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 47857 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47797 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47737 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47677 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47617 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47557 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47497 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47437 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47377 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47317 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47257 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47197 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47137 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47077 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47017 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 46957 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46897 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46837 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46777 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46717 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46657 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46597 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46537 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46477 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46417 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46357 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //