Array 1 1060730-1062222 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023289.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-3837 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1060730 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1060791 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1060852 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1060913 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1060974 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1061035 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1061096 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1061157 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1061218 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1061279 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1061340 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1061401 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1061462 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1061523 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1061584 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1061645 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1061707 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1061768 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1061829 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1061890 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1061951 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1062012 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1062073 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1062134 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1062195 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1078354-1080257 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023289.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-3837 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1078354 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1078415 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1078476 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1078537 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1078598 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1078659 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1078720 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1078782 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1078843 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1078904 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1078965 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1079026 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1079087 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1079148 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1079209 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1079270 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1079331 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1079392 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1079453 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1079514 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1079576 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1079679 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1079740 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1079801 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1079862 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1079923 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1079984 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1080045 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1080106 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1080167 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1080228 29 96.6 0 A............................ | A [1080254] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //