Array 1 1088533-1089063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019434.1 Acidihalobacter ferrooxydans strain V8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1088533 29 100.0 33 ............................. CTGAACAAGAGCCCGCGAAAGCGGCCGCAACAA 1088595 29 100.0 32 ............................. GCAGTCGAAGGCACCGCACAGGCTTCTCCGTA G [1088615] 1088657 29 96.6 32 ..............C.............. GCAGTCGAAGGCACCGCACAGGCTTCTCCGTA 1088718 29 96.6 33 ..............C.............. GAATGTGCGTACCGACTCGCATCCTGCGTTTAT 1088780 29 100.0 42 ............................. ATCTCGTGGTTGCTGTTCTCATCGAGCGTGTGCCTCTCCTCT 1088851 29 100.0 32 ............................. GCTCGGATGCCAGGGAAACGCAAGAAAACAGT 1088912 29 93.1 33 ..........................G.A CGCGTGCAGGGCAGCGATTTGACCATTGGCCTG 1088974 29 100.0 32 ............................. GTTCTTCGGCGAAGACAAAGAGTCGAAAGCGT 1089035 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ========================================== ================== 9 29 98.1 34 CCTCTCATCCCCGCATACACGGGGGGAAC # Left flank : GCATTCGCCACCATCGAACGGTGGCAAAAATTGAAGTCGGCCTCGTAGCAGAGCAGCGCGCAGTTCGATGAGCTCACCAAGTCGGACAGTTCGGCGATGGCAGCCTCTTGCGTATTCAGGTGTTTGAGGAAATATTCTGTGTAGCGCTTCCAATTGCCGTCCTTGCGGTAGCGATCACGCACCTGCTTCGGGCAGCCAAGATCGACCATGTGGACGTACTCGAGGCCGGAGAGATTGAGTGCGCCGGCCAGCGCCTTTTTAGAGAACCCGGGCTTGCGCGACAGGGGCAGTTCACGGATGTCCACGACCGTTTCGATGCCGTGCTCAGCGAGCAACGACATGAACGCGTTAATGTCCAATCCTTCGTAACCTATGGTGAAAACGGTCATACTTGTGCCCTCTAGAGACTGAATCTTACCGGAGGATTTTACCGGAGGATAGGGTGTTCTGACGAGTCTTATTAAACCGGCTGTTATTAACCCGGCAATCAAATATTTCTA # Right flank : CCCTTCTTCCAATCCTTTGAAAAAAGAGCAAATTTCAGGGGCGCTTCAAAGTACCAGCTTTTTGGCACACCCTAAGTTAAGGATTTTCGCACCCAAATGCAATTATGCAAGCTCGGCATGAGACAGCATCTCGGACGCGGCCGCTAATTCAGCGTCGCGTTTCGTGGCTCCGAATCCCACGGTTTTAATCGTGCCGGAGGAACATTCAACGAGAAACCCCGTCGCATTCCCGCCCGATGCAGGAGACAGCAGCGTGCGATAGACGGGGCGTTTCCTGTGCTGCATCTGCAGGCGTTCCTGCAGCCTTGTTTTCGGATCTTTGGCCTGTTCCGGGTCATCGGGGACGGCCTCCAGCAGCGGCGCGAGCCATGCCAGGACAAAGTCTCTCGCCTGACGCTCCCCGCATTCAAGATACACGGCGCCAATGACCGCTTCGACCGCCGATGCGACCACCCGGCTGCTGATCGGAGACTGCTCATCGGTCATGGAGCCGCTGACAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCTCATCCCCGCATACACGGGGGGAAC # Alternate repeat : CCTCTCATCCCCGCCTACACGGGGGGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1151527-1150955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019434.1 Acidihalobacter ferrooxydans strain V8 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1151526 29 96.6 33 ..............G.............. GAATCGTCCGGGTAAAAGCGGCCGCAAGTGTCC 1151464 29 96.6 24 ..............G.............. GCTGGAAAATCCGCTTGGGCATCC Deletion [1151412] 1151411 29 100.0 33 ............................. TCATAGAGGAACATGGCGTTGTACATCCAGTCA 1151349 29 100.0 33 ............................. TGAGCTTCACAAACGAATTGCGTGAATGTGTCG 1151287 29 93.1 32 T.C.......................... TCCTCAGCACCTAAGCACATCCAGTAATGACG 1151226 29 96.6 32 ........................G.... TGGACGCGGGCGGTGAAATGATGAGCGAATTC 1151165 29 100.0 31 ............................. TGGTCCTGCTGAGTCGAACCACGACGCCTAC 1151105 29 100.0 33 ............................. AAGCTGGACGTGACCTATGACTACGGCGACGGC 1151043 29 93.1 31 ..............G.T............ GGAGCCATGTTTTCGGCACTCGGCGGCTGGC 1150983 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 31 GTTCCCCCCGTGTATGCGGGGATGAGAGG # Left flank : CTACACTGAGAATTACTACAACCAATACTACGGTGTCGGGCTCACCCTCGCTGGAGCGGTGCCGCAGCCGGGTATTCCGCTGGTGCTGCAGGTCAAGTATAAGGCCGGCCACACCAGCGGCGCCTACATGACCAGCAACATCTCAAATGACACCGCTTACCTCGGTAGCAAGCCGTGGACGCAGTACGGCGTCGAGGTGGACTACACGCCCCTGTCGAACCTTACCGTGTATCTGTCCTACATGCACACGAAGTTCCAGTACGGCCAGTCGCAGGTTATCCAGACCTCGATCGGGCCGGCGGTCGAACCCAATAGCACGACCAAGCAGAACGTCACGCTGGTCGGTATCAAGTATCGATTCTGGCCGTGCGCCGCCACCGGCTTTTTCATTGGCCGGTGGCGGCTTGTGGGCAAGAAAGCGTTCCCCTGTGAGGCGTCAAAAAGTCGGTACTTTGAAGTGGCCCTAAAATTTGCTCTTTTTTCAAAGGACTGGAAGAAGG # Right flank : GTTCAACGGATTTCCACCCAGTTGATGCGCTTCAGGTTTGCTCCACCGCCTACCACGGTGCGGATGACGCCCACACCGCCTGGCGCGGTTGCGAAGGCCGCGTACTGGTTACCCGCATAGTTGATCTGTCGGAGCGTGCCAACGGCGCCTACGGCGGCCCCTGCGGCCGGCACGCCCCCGTTCGTGACGACCGTTCCCGTATTGTTGATGAAAAACCCAGACGGCGGCAAACCGCCGGTGGCCGGATTGAGCGCCATCGTCCACGACCCCGGTTCCTTGATGTTGCAGCTCACCGGGTTATCCCATCCGGGAACCGTCGTGTTAACCGTAAACAGCCCATTGATGAACGTCGGGTTGTACGTCACTTGTTCGGGGTAGTTGTAGCCCCGCCCCGGCAGGTTCAGATACCAGCCGTATTGCGGCCCCGACCCGCACCCCGTCGAGCCCGGCCAACAGACCGCGTTGTTACTCACGGTGCGGTATTTCGTACCGTCTTGGAT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCCGTGTATGCGGGGATGAGAGG # Alternate repeat : GTTCCCCCCGTGTAGGCGGGGATGAGAGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 3269319-3270453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019434.1 Acidihalobacter ferrooxydans strain V8 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 3269319 36 100.0 38 .................................... GGCATGGCGCACCGGCCAAGAAAAAAACGCCCTGGTAC 3269393 36 100.0 37 .................................... CTAACCCGCCGTCACCTGCTCAATGGGAACAATTGTG 3269466 36 100.0 37 .................................... ACGGTATAGCGCCCGTCAGGCACGACACGAGACGATG 3269539 36 100.0 38 .................................... ATATGTCTCAAGAACAAGCCCTTAAGCACTCCCTACTT 3269613 36 100.0 38 .................................... ATGAAGAAGGGGAAGAGATCGGGGATCTCGTTGAGATC 3269687 36 100.0 38 .................................... ATCATCATTCAGCAAGAAATCAAACGCAGTAACTCATT 3269761 36 100.0 38 .................................... CACATGCTTGCAAGCACAAATGTGCGTTTACTTGAAAT 3269835 36 100.0 35 .................................... GCCAGAAAATTGCTCGACTTTGTCAGACACTATTT 3269906 36 100.0 35 .................................... AGCGCGTCGGTCGCGTATGGGGTGAAAGGCGCGCT 3269977 36 100.0 40 .................................... GTTAATGCGTGGGTGGTGGGAACCAATGGACTGGTGGCCC 3270053 36 100.0 38 .................................... GAGACCGTCGATCTGAGCATAAACGGGCCGACCTTCGG 3270127 36 100.0 37 .................................... CGCGGGCATCCCTGTGTTTGATGCGGCAAATCTGGCT 3270200 36 100.0 37 .................................... CAGCTTTTTCAAAGAGGCGCGCAGTTGGGAAACCGAC 3270273 36 100.0 37 .................................... CTTGACAGCCTGCTGCGGAGAAATTCCGTCTTTCTCG 3270346 36 100.0 36 .................................... CACGATATTCGTGCCATCCGTGATGTTGAGCGTGTA 3270418 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 100.0 37 GCTTCAATGAGGCCCCGGCATTTTGCCGGGGAAAAT # Left flank : GCGACCGAGGTTGCCAGTACCTGTCGGTGCGCTACACCGGGCGGCTGGCTGAGGCCGGTATCGAGGCCTCCGTCGGCAGCCGGGGTGACTCCTACGACAATGCCCTGGCGGAGACGATCAACGGCCTGTACAAGGCCGAGGTCATCTACCGCAAAGGCCCCTGGAAGCACATGGAGGCGGTTGAATACGCCACCCTGGAGTGGGTGGACTGGTTCAACCACCGTCGGTTACTGGAGCCCATCGGCAACGTACCACCGGCGGAGTTGGAGGCGGCATACTATAGCCAACAAAAGGAGTCAGCCAAGGCGGCCTGACTCAAACAAAACAGTCTCCGGAATACCCGGGGCGGTTCACACCATAACGCCCGGCTTGTGTAGGGTGGATAAGCGTAGCGCATCCACCAAAACGGTCGGCACCGCGCCGCAGCCTGGGCCGGTGGATGCGCTACGCTTATCCACCCTACGAAAACCACACAAATTGGACGCGCCTGATGCACGCTC # Right flank : TCAGACCGCGCCTGAGGCTAAGTATAGCGCCTCGGATGGGCGTTTTTGCGAGTGCTGCCGTTTGTGACGCGTCGCGGTCGGTCACCGCCAGGAGCTGGCGTCGGGAGATCCTGTTGTTTCGCTTTATTATCAATGGACTGTAATCTGCGAGCGCTCCCCGGGGCTGCGGCGCGCTGCGCAGCGCTCGCGCGCGCACGGCAGGCGGGGTGTGCGCGACATGACTCATACGATGATCGGCGCGCGTTCGATGGCTTCGAAATTCTTGCCAAGACTGACGACGCGGGGTTTGACGCCTTCGGCCGGGCCCAGGTCCATGAGAACGATGTGGTCGTGATTGTGGTGGATGATGCCGTCGAGCAGGGCGATGAGTTCGGCATGTCGGGTGCGACTCATGCGACACTGGAATACGGACAGTTGCAGCCATTCGCCGTAGCCTTTCATGAGCCGGAATACGCGCCGCCAGCGCTTGGGGTCGGCAATGTCGTAGGCGACGATGTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCATTTTGCCGGGGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //