Array 1 176746-177433 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUO01000001.1 Pseudomonas kirkiae strain P4C NODE_1_length_369899_cov_14.050023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 176746 28 100.0 32 ............................ CGCCCGAGGGCTGTGGCAGTTCGAGCGCGGCG 176806 28 100.0 32 ............................ AGTATGGCCGAAAACCAATGTCGCGATATCTT 176866 28 100.0 32 ............................ ATCCGCCCGGAGAACAGCACGTCAGTTGCCAT 176926 28 100.0 32 ............................ AGAGGACGTCGGCCGGGGCGTTCTCGTCATCT 176986 28 100.0 32 ............................ TACGCCTGCTGGTGCCTCGCAGCGCGTGGTAA 177046 28 100.0 32 ............................ TGCGGGCCTGACTTGAGGATTGGTTTGATCTT 177106 28 100.0 32 ............................ TATTTGAAGACGAAGAAGCCATTGAGTGCTTC 177166 28 100.0 32 ............................ ACACACGCCGCTCCTTGTCGTCATAGACCAGT 177226 28 100.0 32 ............................ AGCACCCTGACTGTCACCCCCACCCAGCTCCG 177286 28 100.0 32 ............................ TGTCACCTGGGTGGCGCAACTGGTGATTCTCA 177346 28 100.0 32 ............................ TCACCCATCACCCCAACCCCAGTGGACGTACC 177406 28 82.1 0 ..........A.....C.G..AA..... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCGCTGGATCGCCTGCTGGCGCTGAACTGGCTCACGGGCATGCGCGACCACGTGCGCCTGGGCGAGTTGGCCCCGGTGCCGGCAGGGGTGCGTTATCGCCACGTCAGCCGTGTGCAGGTGGACAGCAACCCGGAGCGCGCCCGCCGACGCCTTGCCAAGCGTCACGACATCAGCGAGGAAGAAGCCCGCCAGCGCATCCCGGACAGCGCCGCCAAACGCTGCGACCTACCCTTCGTGATCCTTCGCAGCAATGGCAACGGGCAACCCTTTCGACTGTTTATCCGCCATGGCCCGTTAATCGACATCCCAACCCCCGGCCCCTTCGGCAGTTACGGCCTAAGCGCCACCAGCACCATCCCCTGGTTCTGACCCTTTTTTCAGGCAACGCTGGAGCCCTTGTAAAATCAAGCAGTTACAAGCGGCTTCAGAAAAAGGGTAAAGCCTGTGGAAAATGGCTTTTTCTCTTTGGAAACGGATAGTTATTGAGGAAACTGGCTA # Right flank : ACTGATGATGGCTATACCGGCCACGGCGGGCCTTATTGCCGCTCCAGTGCCTCCAGCTCCCGGACAGCCTCTTCCAGCTTGCGAGTCCTTTTCTCGATCTTGCCGGGGTCGCCGCCCTGCTGGGCTTCACGCAGGTCGGCCTGGCGTTCCTGGACTTCGGCCTGCGCCGCCTCGTAGTCGGCCTGGCGCTCTTGCCGCAGGCCTTCTTCGGTACAGTGCTCGCGCACGGCGCGCAGGGCCTTTTCCAGGCCGTGGGTGCGGCCCTCGTTGCCGTGCGCCCTGGCTTCCTCTAGCTGGCCGAGGATCGCGCGCTCCTTGTCGGCACAGCTCTGCGGTGCGGCCTGTATGGCCGTGCAGAGCAGGAGGATGGGGGACAACAGCAGCGAACGGGGTAGCGATATCATTTCCGGAACCCTTCCTGTGAGTTTCCGGCAGCCTAACACTCGCGGTGGCCGCTGGGCCTCCGTAGAATTGCGCTCTTTTTCCCGGAGCCTGCCGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45355-45682 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUO01000004.1 Pseudomonas kirkiae strain P4C NODE_4_length_170812_cov_14.099751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45355 28 100.0 32 ............................ TTACCAGTCAGCGTCGCTGCCAGTGGCGTGAT 45415 28 100.0 32 ............................ AAGCGCACTCCTTGGGCCGGAACAATGGCCAA 45475 28 100.0 32 ............................ AGGCCGTCGCTGTGCCGCCAGGCGACGTCCAG 45535 28 100.0 32 ............................ TGAAGGCGCGACGCTACATGCCGAAGCGGTAG 45595 28 89.3 32 .....T......A...A........... AGCCACCCTCGAAGTCCATGTTGCAGGCGTTG 45655 28 75.0 0 .C.........CAC.......CTG.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCCCCGCCCGTCGATGGCAAGGCCAACGCCCATCTGCTGGCATTCCTGGCCAAGGCCTTCGGCGTGGCGAAGAGCCAGGTGAGCCTGGAGTGCGGCGACTCGAACCGGCAGAAGCGCCTGCGCATCCACGCCCCACGACAGTTGCCGGACCTGCCGGGCCTGGTGCACCCGGAGAGCTGACCCACCGACCGGGCCATTCAAAGAGTGGCCTGTCATAGCCGTGCCATACATGCCGGGATTCCCGTATAGGCAGGCATCCCGGCAATACACTCACACCACTCACCTGTGCCCCCGCCTGCGCGGGGACGACGGATACTGCGCCCAGGCAAACATTTCTGCCCCCGGGTTCAGCCCGTACCCTGCCGCTGACCCTTTTTCCAGAGCCTGTATCAGGCCATTTAAAATCAATAACTTACAGACAGACCAGAAAAATGGGTAAACACAGTAAAACAAGGCATGGCGCTTTCCCAATCAAGCAGTTAGCGTAGCGATGCTCTA # Right flank : AGCCGCGTCCTTTCCGTCCCGTGCTTGCTGCTGGGGGCATCGCTCTTTAGACTTGCGCCCTTCCTCCGATTCAATAGCAGGGTCGCAATGCCCACTGCCTTTCCCGAAGACTCCATCGGCCTGGTCCAACCCCAGGTATTGCACTTCAGCGAGCCGCTGGCGCTGGCCTGTGGCCGCAACCTGAACGAATACGATCTGATCGTCGAAACCTACGGCGAGCTGAACGCCGCGCGCAGCAATGCCGTACTGATCTGCCACGCCCTTTCCGGCCACCACCACGCCGCCGGCTACCATAACGCGGAAGACCGCAAGCCGGGCTGGTGGGACACCTGCATCGGCCCCGGCAAGGCCATCGACACCAACCGCTTCTTCGTCGTCAGCCTGAACAACCTCGGCGGCTGCAACGGCTCCACCGGCCCGAGCAGCGTCAACCCCGCCACTGGCAGGCCCTATGGCGCGGACTTCCCGGTGGTCACCGTGGAAGACTGGGTACACAGCCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //