Array 1 1486-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFX01000008.1 Nitrosomonas ureae strain Nm9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1485 32 100.0 34 ................................ GTAAAATAACTCATACTTATTCATGCGATCATAG 1419 32 100.0 32 ................................ CATTGCCAATGGCTGATCTGATGACCGTGTAT 1355 32 100.0 33 ................................ AGTCCTGGCCGATGATACAGGCGGAGTTATCGG 1290 32 100.0 34 ................................ GGTGTCCGAGGCTAATATTAAGGTTCCGTCTCAA 1224 32 100.0 33 ................................ TTGGCCGCGGTGTCAGTATACGCTAGGGTGTTG 1159 32 100.0 33 ................................ CATGTGAATTTCAAAAGCTTTGCCAACATAAGA 1094 32 100.0 32 ................................ TTCGAGTCTGAATTTATAACCTGTTGTATATC 1030 32 100.0 33 ................................ TTAAATGCCCGTCTGTCGTAAACTTTCTTAACC 965 32 100.0 33 ................................ AGCATATCCGTACCCGGCTGATAAGTTACCGCC 900 32 100.0 33 ................................ CCCTTGGTTAATGGCGCATGGAATCATATAGCG 835 32 100.0 33 ................................ GCGTAATACACCTGATAAAAGTATTCATCCATA 770 32 100.0 33 ................................ GAAGAAATACCCGATGATAGAATTTTTCGTGAA 705 32 100.0 33 ................................ TAAGTCATTACATTCCATAAGAATCATATTACA 640 32 100.0 33 ................................ CATTATCAGCACCGATATCAATTAACGTTTTAT 575 32 100.0 33 ................................ AGATATACAGTAGACATGCGATTTTCTCAAAAC 510 32 100.0 35 ................................ AAGAAACCTACAGGAAAGCTACAGGCTCAGCGGCC 443 32 100.0 32 ................................ CCTATGGCTTGCGATGCAAGACCGAAGCCACC 379 32 100.0 32 ................................ CAACATATTGGCAAATACAAGGTGTTGAAGTA 315 32 100.0 33 ................................ AGATATACAGTAGACATGCGATTTTCTCAAAAC 250 32 100.0 36 ................................ GATGGTCAAGTGCCGCAAGATTTGACATACAACGAC 182 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 100.0 33 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TGCCTTTTCTGTGGAAATAATTTAGAGGTTCTCAGATGATGATTTTAGTGACTTACGATGTCAGCTTTAAAACCGATACCGGGCCAAAACGTTTACGAAGGATTGCAAAATTATGCCTAAACTACGGCCAACGAGTACAGTATTCAGTATTCGAAATAGAGGTTGATATGGCACAATGGACAAAGCTAAAAAATGAACTAATCGATGTTATTGATGAAGAATTCGATAGCTTAAGATTTTACTACCTGGGAAATAACTGGGAACGTCGTGTTGAACATATTGGCGCTAAAACAGTATTAGATTTAAATGGCTTGATATTACTGTAATGCGAATCCTAAGCGAGCATAAAAGCATCAATATTTTTGCATTCATTAAGATAATGATTTTTCTTATTTTTTATTTCAGCAGTAAATAATTTATAATACTTTTCGCAAATGCTTTCATTGATTCGCAATTTATTGGTTTTTTAGCCAATGATTCCAATCAATTAAGCATACGCT # Right flank : CTATTTAGTCAGCCCTGAAATATCCACAACCACTTGATATTATGCTGGAATGCACTGATTCTTAATGCTCATAACGACCGGAAATGTTAAAATATCCAAGTGTTTTCTGGTCGAAATGGTGATTAAAAATGCTCAGACGTAGCAGTACGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2174-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFX01000117.1 Nitrosomonas ureae strain Nm9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2173 32 100.0 33 ................................ GCGCAACAGTTGGTAGGCGCGCATAAAATACTC 2108 32 100.0 34 ................................ GAGAAAAACGAGCGTGTCATGGAAACCATAGCAC 2042 32 100.0 34 ................................ TGGTACTATGATACAGCAAGTGAAAACCCTGTAC 1976 32 100.0 33 ................................ TTTAAAAGGCGCGCTGGATTGGCAATTCCTAGA 1911 32 100.0 33 ................................ GCACCTGCCCTGTTGCGCCGGGATTATAAAAGC 1846 32 100.0 32 ................................ ACGGGAATGAGAGGATAGTAATCTTATTATCA 1782 32 100.0 32 ................................ TAAGACTCCCGAGCAAATCAAAACAAGCGAAC 1718 32 100.0 33 ................................ GTGTCACTGACTTTGAGGGAACAGACCGCGTAA 1653 32 100.0 35 ................................ TACTGTTGCCGCAATGACTTCTGGAAGTGTAACGC 1586 32 100.0 32 ................................ AGGCGTTACGTTAGTTAGTAAGGTGTTATATG 1522 32 100.0 34 ................................ CCTCAAAGTCGGTAACACGAATATTACTAATCAG 1456 32 100.0 33 ................................ CGTTATCGCTTGCGCTTCCTCCAGAACGTTTGC 1391 32 100.0 33 ................................ AAGTGGTTCAATGCCATAAGAAATACTTCTACT 1326 32 100.0 34 ................................ TATATAGGCAAGATACCTGAAGGGATGGTTATAG 1260 32 100.0 33 ................................ AATAAAATGTTCTGGTATGTCATTGAAGGTGGC 1195 32 100.0 32 ................................ GACCGGAGCGCCTCCGATTGTGTCTAGATCGA 1131 32 100.0 33 ................................ ATCAATAATATTCAAAAGCCCAGTGGACACAGG 1066 32 100.0 33 ................................ CATTTCCCAAACTTGTCTATCTGTTGATAGCGG 1001 32 100.0 33 ................................ TGATTGCTCGATATCTGAAAACCAGTGCTCAAT 936 32 100.0 32 ................................ CAGGAAAAAAATGCGAAGGCACAACGAATCAG 872 32 100.0 34 ................................ GGTTTCCTGGTACCCGAAGCAAAACGACAAAAAC 806 32 100.0 33 ................................ TACTTTGATATATACGAGCAATCGAACAAGCGT 741 32 100.0 34 ................................ CGTTGAATCATTTGCTGACTATTCAGGCCATGTT 675 32 100.0 33 ................................ CATTCATTGCCTATGCTTCGTCGCCTGATGGGA 610 32 100.0 33 ................................ CTTAACAATGAAGCGACCACAAAAAATAATACT 545 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 26 32 100.0 33 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : AACTACCGGGGCATGCATTTTAGTAGGCAATAGTTTTCTCGGGTAGCTTTTCCAGAACAACTGTCGTTTGATACTTTTTCAGGGTCGACTATTTAGCTTCGATACATCAGTCTCTTTAACG # Right flank : ACCCGTTATTAACTCGACCATATCAAAACTGCCAGCAAAGTGGTGTACGACATGACACAAAAGGTAAAGAATCACTCTTTGCTTTGGTTTCCCCAGCTATTCATACCTACTTCGTTATAGCTCGACGTTTCATCACTTTTCCCATCCGTTCAAAGAAGCCGTCTAAAGCAATTCAACGGCAAATTGGATTAGATGTATTCTGAAAGTTTAGCGTATTACAGAAAATCCAAGAATACAGAGATTGAGAGAATATACAATGCAGTAAGTATTTACAGTAACTTTTATAAAAGCAATAAATATTCTATGTCTGCCGATGTTTTCGATTCCGGCCCTGGTTGAAATTTCATGTCATATCAGACTGCAAAGTTAAATTTCTCGGATTTTTCCAAAGATAGAAGTAATTTAACTAACCCTAACCTAGGGTCTGTTGACATTTCACATAGGTAGCCACAGATATCCACATGCCATGGCTACCATACTCTCAAAATTTCTCTTCAGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 48515-47423 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOFX01000001.1 Nitrosomonas ureae strain Nm9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 48514 37 100.0 32 ..................................... CTAATTATAAGAGCAACCAGAAAATTATAATT 48445 37 100.0 32 ..................................... TTTAATTTAGCTACAGTTACCGCAGTAAGGAT 48376 37 100.0 34 ..................................... CAGCAAGCGCATGACTGATTTTAGCTAATGCCGA 48305 37 100.0 34 ..................................... TCGTATAGAGATTTTATTGATGCAAATGGAACTC 48234 37 100.0 35 ..................................... CTTATTATTCCTGCTTGATATAGTTTACGAATATA 48162 37 100.0 32 ..................................... CATATAAAAGCGTGTAGTCATGAGTTAAAATC 48093 37 100.0 34 ..................................... ATCGCCTGTACATTGGACATGAACTGCATAAACT 48022 37 100.0 35 ..................................... TAGACATGTTAATTCTCCTAAGATGTAAAAGATCG 47950 37 100.0 33 ..................................... GCAAGCCCCGAAGCTTCCACAACATACTCTCGT 47880 37 100.0 31 ..................................... GTTGCGTTACTGTTAAGCCGTTTATTAAATA 47812 37 100.0 33 ..................................... TTATCGTTCTTGGCTATACTAAAAGCTTTGTGA 47742 37 100.0 36 ..................................... CATTAACGCTTGGTAGCGTTTGTCTAAGGATTCGAC 47669 37 100.0 33 ..................................... CTGGGGTATATGCTGTTTTTGCTGCTTTGGTTA 47599 37 100.0 34 ..................................... GCCGTCCCGTGGCGGTACTACGTCAACCTAGAAA 47528 37 100.0 32 ..................................... CCCAAGCCAAAACTGCCAAAAATCCGAAGAAG 47459 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 99.8 33 GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Left flank : CGATCCGCAGATGCGCTTCATCGCCAACGGCGGCTGGCTTGAAATGCATACGTATGCGGCCTGTCTTCAGCTCAAACAGAAATGTGGTATTCAGGATGTGGCGTGCAACATTGTTATTCAACGCCATCCGGCAGGTAAAACTGCGGTAAAAAATGAAATCGATGTCGGCCTGATTCATGCCAACCGCTTGCATTTGATCGAGTGCAAAACGAGGCACTTTGAAAAGGATGCAGATATGCTGTATAAACTGGATAGTCTGCGTGATTTGATGGGCGGTCTGCAGGGCCGTACGATGCTGGTCAGTTTCAACAATCTCGGCAAAGCCAGCCGCGCCCGTGCCAGGGAACTCAATGTTTCTTTGTGTTGTAAAACTGAGTTGAAGCACTTACAGCAACATCTAACCAACTGGCTAACCACGCGAGGCTAACTTTTTAAAAATGAAATTTTTTGTCAACCCTCTCTATAAGCCTATGAAAAATAATGCAGAAACGAATCATGCG # Right flank : GCCGATCATGTGAGATATGCTTACCGCGGGGTTGATAAGGATGAAGCTTGCTTGTGAGTTGATGGGCATACCGAAAACCTTAGAGGTATTTTCAATTCACTATAAATAGCTCATTCCAATCAGTAAGTACTATACCTTAAGTGTCATACCGTATATAAATCATTAGCTTAAGTTGTTAGTATCAATACTCACCCACTTATTTGGAGGTGTATCATGTCAACACAAATCTTTCATTATCATAAAACTGACCGTGTTAATGTACCCGTCATGTATTATATATTGATATATGGTCAGATAATTGCAGGTCTAATTTTGTGGAGTGTATAAGTATTTTTAACCAGCCTTATAAACCTGCTCCGGCAGGTTTATAGGTACGCAATCCAACAATGAGTATTTTTATAAATTCGGATAATAATGATTTCAATCTTAATATAAGGAATTATTATGAATTTACTCGAATTAGGCGAAACCGTTCTTCCCTTTTCTATTCCCTCATATAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //