Array 1 2482-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAR01000031.1 Legionella pneumophila strain D5178 D5178_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2481 28 100.0 32 ............................ TTAACGAAGCAATTAGTAAATGTCGCCGACCT 2421 28 100.0 32 ............................ TTGTCCTTACTGGAATATCGCATACGAGAAAA 2361 28 100.0 32 ............................ TTCACCAGACCCCGTACCATACACATTGATAA 2301 28 100.0 32 ............................ CACTCGAGCAGAGACAGTCTCAACATGCCATT 2241 28 100.0 32 ............................ ATCATATGGATTAAACGGAGAAGCCAGCGCAG 2181 28 100.0 32 ............................ AGTCTCTCTGTATCTCAATTGCCTAATACGTT 2121 28 100.0 32 ............................ AGATTGGTTATTTGATGAATTAAACAAAGAAT 2061 28 100.0 32 ............................ AATAAAGATCCATACGGCTTGTGGATTGCTAA 2001 28 100.0 32 ............................ ACCATTTGCGATCCAAATCCCATGGGGATCTT 1941 28 100.0 32 ............................ TAAAGAATCAAGAACTAGGGACTCTTGAATAG 1881 28 100.0 32 ............................ TTGGTCTGTAGATGAAATATGTACACCTTCAC 1821 28 100.0 32 ............................ TCACCACTGTAATCCAACGAGAGCACTATCTC 1761 28 100.0 32 ............................ ACTCTTCGCCTGAAAATTTAACTCTTTTTACT 1701 28 100.0 32 ............................ TCATCAAGATTACGAACCAACTTACGTTGGAC 1641 28 100.0 32 ............................ TATTTCCTTGGCGAACCGCACCTAAAAACTCT 1581 28 100.0 32 ............................ CAATGTAATCTGTGGACATTAATTCTTCTGCA 1521 28 100.0 33 ............................ ATCATTTCCCCCGCCAGTGATTGCTGGTAAGGC 1460 28 100.0 32 ............................ ACGCTGGTTCACCAGTTACTCTTAAAGTAGCA 1400 28 100.0 32 ............................ ACGCACAGAAGTGAACAGCGACAGCCTCTTAT 1340 28 100.0 32 ............................ ATCTTTTAATTTATTTAGGCTTCTTAAATAAT 1280 28 100.0 32 ............................ AATCGACGAAGTGTATCAAAAAATTGCTGAGA 1220 28 100.0 32 ............................ CACTGAATAAAACCGCTGTCTGTAGTGCTGAT 1160 28 100.0 32 ............................ TGTTAAACCAACTCTGGTTAAATTTGTAAAAT 1100 28 100.0 32 ............................ ACATAGAAAGTGTTGTAAAAGAGTTAGATGTT 1040 28 100.0 32 ............................ TGCATCTGGGGCTAATATAACAGTATTGTCTA 980 28 100.0 32 ............................ AAACTGGCCAAGTGCAGGACACGCCATATTTT 920 28 100.0 32 ............................ CTAGTATAGTTAAATCGTCCCCCGCCTAGATT 860 28 100.0 32 ............................ AACTTGTAGAAAATTTCCAACAATGGGGCATT 800 28 100.0 32 ............................ AACAAAAAAATTGGGATTGTGTCGAGTGTATT 740 28 100.0 32 ............................ ACAATGATTTATAAGAGAAAGGGTAGGAAATG 680 28 100.0 32 ............................ TGTAGCACAACTTTTGTATATGTGTGTATTAT 620 28 100.0 32 ............................ TTCATAAATCTCTTTTCCATTTTTATCTTTTA 560 28 100.0 32 ............................ CTTGACGTTTTATAATTAATTAGTTATAATTT 500 28 100.0 32 ............................ TTCGTGGGACGCCATGCCCACAACTCGTTTTT 440 28 100.0 33 ............................ CAAATTGGGGACGAGATTAGAAATCTTGTGGAG 379 28 100.0 32 ............................ TGAAAGTCAAAAAAAGGGCAAGAACGGTTCAA 319 28 100.0 32 ............................ ACAGTGCACAATTCACATTAATTCTATCTCCT 259 28 100.0 32 ............................ TTAATAGACAATAATAAATGTTTAAACCATGA 199 28 100.0 32 ............................ ATAAAAAAAACCACGCAAAACACCATTAACTA 139 28 100.0 34 ............................ CAAAAAAACTTTTAGATATGGCCGCTTATAAAAT 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 41 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGTTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : AAATAGACCAGCACCCGATTGCCATAGAGTTTTGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49-1156 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAR01000017.1 Legionella pneumophila strain D5178 D5178_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49 28 100.0 32 ............................ TTATTGGAAAAAACAACGGACATTTGCGAAAA 109 28 100.0 32 ............................ TCATCCCAACTACTGGGGGCAATGATGCTCTT 169 28 100.0 32 ............................ TGTAATCGGTGCATAACTATTTTTAAGTTGCC 229 28 100.0 32 ............................ TCTAAAAGCTTGGGTTTGGCAACTTGGCGAGC 289 28 100.0 32 ............................ CAAATAGCCAATTGCTAAATATTTATTTAACA 349 28 100.0 32 ............................ TAAGAGGGGGCAAACTGTGGGATTGTCAATTA 409 28 100.0 32 ............................ CTTAATCTTTCCGTAGCATGAACGAGATGGTA 469 28 100.0 32 ............................ TCCACATGTTTCTCCCCACTCCGCCACAGTTT 529 28 100.0 32 ............................ TCTGCAAAAGAGACACTAGACAATTATCTGTA 589 28 100.0 32 ............................ GCAAGGAGCTTGTCTAGCCGCTATTCCATACA 649 28 100.0 32 ............................ AGGAAGGAGACGAGCTACTTTATAGAATAGCT 709 28 100.0 32 ............................ TTGGACGTGCCTATTCCAATTCCCTGACGACT 769 28 100.0 32 ............................ TGCATCGGATAGTTCTTAGTTTGTGTGAAAGC 829 28 100.0 32 ............................ AAAGGGAGATAAAGGCAGCGAAAATGATAGTC 889 28 100.0 32 ............................ AGTTCGCGCGGGACTCGACCCAGAAAGCCCAG 949 28 100.0 32 ............................ ATTCGCCCCCACAAGTTCATGACATGGCTTTG 1009 28 100.0 32 ............................ TGATAAGCAGCTAACTGCATTTTATGCTCATC 1069 28 100.0 32 ............................ TTTTGCGATAGAATACGCTGGGCGTTTTATGC 1129 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACAGGCAGCTTAGAAAAATAAGTTAAATGAGATGCATGAAGCCCACTTG # Right flank : GTTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTATCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATTCCTCTCCAACGTTTGAGATGGGGGAAGGTATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28532-26195 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEAR01000014.1 Legionella pneumophila strain D5178 D5178_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 28531 37 100.0 35 ..................................... CTTTATCAATTGTAAGATTGAAATATTCGTCCATT 28459 37 100.0 34 ..................................... AATAGCCCAGACCCTGAAAAAGTTAGAGATCGAG 28388 37 100.0 35 ..................................... CGGATCCATTTTCCTGTTAGCTGGACAGTATGTTT 28316 37 100.0 34 ..................................... GAAAAACATGTCTTAAAATCCGTTGACGAGGCTA 28245 37 100.0 35 ..................................... ATAGCTCCAGGTAGGGAACTTAAAAAACTAAACAA 28173 37 100.0 35 ..................................... ATCATACACTAAAGCCATTGTCTATTAATCTCTTA 28101 37 100.0 34 ..................................... ATTGCGGATTTGAAAGACCAAACAATGTTTTTAA 28030 37 100.0 33 ..................................... TCTAAAAAACTTCGTTTTGTGTCTTTTGACATC 27960 37 100.0 33 ..................................... TGAAGAGAAAGGCTGGACACATTGTTGTATGTT 27890 37 100.0 33 ..................................... TAATTTTCACTACCCCTCCCTGATTTACAGACA 27820 37 100.0 35 ..................................... GCAATTACTCTCCGGCGGCCAGTAATGCAATTGAT 27748 37 100.0 36 ..................................... TCTGGTAACTTACAGTTTTCGCAAATGTCCGTTGTT 27675 37 100.0 34 ..................................... AAGAGAATTAAGTTTGATCCACCTGTTGGACTAG 27604 37 100.0 36 ..................................... GACAAGTAGCTATGTTTTTTGTCTTAAGAGTTTATC 27531 37 100.0 36 ..................................... AGACCAAAAAATTATATTATAATAACCTTCTGGCTT 27458 37 100.0 35 ..................................... ACTTTTTATGCTTATTTTCCAAGTGCTTTAGATTT 27386 37 100.0 35 ..................................... TTCTTAAATCGCCCATCTTCAACTTTTTGTTCTAT 27314 37 100.0 35 ..................................... TTGACATTATCGTTGAGACCTTCACACTGATTGCT 27242 37 100.0 35 ..................................... TTATGAGTTGCCAACTAACTTTCGGAATATGGACT 27170 37 100.0 35 ..................................... TATTACCAAAAAGGCGGTAAGTCATGGAACTGAGA 27098 37 100.0 34 ..................................... TTCCAAGAATCATGGCATCAGTTTCTTTCTCTGG 27027 37 100.0 38 ..................................... CTTATCAATCATTTAATCGGTGTGCAAAGACAAAATAC 26952 37 100.0 35 ..................................... TTTCCAACCATGGAGTGGTTTATGCAATCAGATGA 26880 37 100.0 32 ..................................... ACCTCCGGTTTAATTCTATAATCCTTTTTGAG 26811 37 100.0 36 ..................................... AATTATGGAAAATTTGAGAGAGTTGGCACTGTTTTG 26738 37 100.0 36 ..................................... TAAATTACACCTAGATTGTCATGCATTCTAGTATAT 26665 37 100.0 35 ..................................... CTTTATTGCAGTTTTTAACCGCGCAATAGTGCGCG 26593 37 100.0 37 ..................................... AACTAGAAGAACTAACGCATCCTAAGCCTAAGTATAA 26519 37 100.0 38 ..................................... GTTAAATCAACACGGTTACATCTAATCAGTATACTCTA 26444 37 97.3 33 ...........................G......... CACTAGATGTAAAATTTGCTGGTCACTAATAAA 26374 37 100.0 34 ..................................... TCAAGATCGGCTGTTGTGCCTGATTCTCCAAGTC 26303 37 100.0 35 ..................................... GTCGCATCGTTTTCATGGTCGTAGCCTGACTTCTT 26231 37 81.1 0 ....A......C...........TT...T.A.....T | ========== ====== ====== ====== ===================================== ====================================== ================== 33 37 99.3 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCATATGGAATGCTTTCTGAATTGATTTTTGAAAAATCATGTACCCGAGGCTATATTATTACTGGTGAAAAAGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGCTTGAAATTTATGCTAAAATAAAGAAGATTTTTGACACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTAAAATCGTTATATGCTCGCTATTAATACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTCAAGTATTGCCTTTTTTTTCGAAAAATCAAGTCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : ACCCCATACTTTATTCTCTGTATACTATTATAGTAAAACTCCATGGAGTTATTATTTTATATAATTAAACATGTCGTAACTCCATGAATGTGACACTTTCATGGAGTTACGACAGCCGTTATGTTTGCTTGTTTTTCATCTTATTTGCTTAATAATTAACTTGATAATTATTAAGTGCTTTTATTTTACTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAGATTATCTTTGTAACAAATTTTCTTAATTTAATTTTCAAAACCATGCCCAACACTGGATTGTCTTTTGTTTTGTACATCTCAACTGAATATAATACTAGTGAATTTATTTTATTAGATAATTATTTCAGTAAGTTCTAATATTCAGGACTAATTTCCCAAGAATATTAACCTCAGCAATATCACTCACTTTAATATCTGGCCAATTATCATTAAGCGTTAAAAGCTCGAATTGTGAGGATGTATAGGACAATTTTTTATATACACAGATAATTGCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //