Array 1 23771-26141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAN01000046.1 Luteimonas huabeiensis HB2 HB2_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 23771 28 100.0 32 ............................ ACCGGCGGCAACATAGCCGCGCACGTAGCTGC 23831 28 100.0 32 ............................ CCGGGCACTCCCCGGGCGGCCGTTTTTCCGAG 23891 28 100.0 32 ............................ CCTGAGCGCCGCATCGCGGCACGCTTGGAATC 23951 28 100.0 32 ............................ GTGCTACCGGCAACAGCGCCGTGGACGCCACC 24011 28 100.0 32 ............................ TCGGCCTGATCTCGTATTCGACATTCGAGTTC 24071 28 100.0 32 ............................ CTCGTCTGTCGAAGCTCTTGGATGTCCTGCTC 24131 28 100.0 32 ............................ TTGCCCGGCTCCCACGCAATCGACCCGAGTGC 24191 28 100.0 32 ............................ GCCCACAAGACGGTCCACGACTACCCCGGAGG 24251 28 100.0 33 ............................ GATGAGGCGTGGGCGGCAGACGTCAGGCGAATG 24312 28 100.0 32 ............................ AACGCGCCGATGACCCGCAGGGTGTCGTGAAC 24372 28 100.0 32 ............................ TTGAGAAGTGGGCGATGAAGGATCGTTACTCG 24432 28 100.0 32 ............................ AACACTGCCCATGTTGGTCGAAACGGCCAACA 24492 28 100.0 32 ............................ GGTCGGGTCCGGCACCTGCCGGATGGCCGCCC 24552 28 100.0 32 ............................ AACGGCGCAGACGGGCGCCGGGGTTGGCGATA 24612 28 100.0 32 ............................ ACGGTGACGTCTGGCAGGACCATCCCGGCGTA 24672 28 100.0 32 ............................ TCGTCCACCTGATCGGCGTTGTCGTAAGGTTC 24732 28 100.0 32 ............................ AAGCCCGCGCCGAAGGGCAAGGGCAAGTCGAA 24792 28 100.0 32 ............................ TGTGCCGCGCTGGACAAGCGCGGGGATCGACA 24852 28 100.0 32 ............................ ATCGGCGGTCAGTTGTCGTTGCTGATGCTGAT 24912 28 100.0 32 ............................ TGCACGAGCTCGTCGCAGCGAGGAAGGCGGCC 24972 28 100.0 32 ............................ ATCCAGGGGCTGCCCGCGGCGACCGCGCTCGA 25032 28 100.0 32 ............................ ACATCCGTCGGCGCTACGGATTGCCGTTCGTG 25092 28 100.0 32 ............................ CAATCCTTGCGCAGAACAGGGATCGGCTACTT 25152 28 100.0 32 ............................ CTGCACGATGCGACCTACGGGGGTAGTGAAAT 25212 28 100.0 32 ............................ GCGCGGGTCGAGACGGTCAACGCCCTTGAGGC 25272 28 100.0 32 ............................ GGTCGAAACGCAGGAGTGGTTCGAGGCAAAAG 25332 28 100.0 32 ............................ ATCAACGAACTGCAACACGTCTGCCACCAGCG 25392 28 100.0 32 ............................ CGGATGGAGTGACCGACGCCATGAAGCAATCG 25452 28 100.0 32 ............................ ATGAAGCAATCGCATCCCGAACTCGTGAAGGC 25512 28 100.0 32 ............................ AGCGTAGGTCATCGGGCCCGAATTCGTGGCCC 25572 28 100.0 32 ............................ GACCGCGAGCAGGCCCGCTTGGTAGCGGGCAG 25632 28 100.0 32 ............................ GCATCAATCGGGAGGGGCTGCACCCCTCCCCC 25692 28 100.0 32 ............................ TCGGCAAGGGGCGAGACCTGGAGGTTGGAGCG 25752 28 100.0 32 ............................ GTCGCGGCGGTCGGGCTGGTGTTCCTCGGGAT 25812 28 100.0 32 ............................ TGGGCCGCCGCAACGGAGACTCGTCTATGCGT 25872 28 100.0 32 ............................ GCGGCGGGCGGGCGCATTCTGGGCGTTAGGGT 25932 28 100.0 32 ............................ GAGTGGGAGGGCGCCCACGTCGCCGGCGACCG 25992 28 100.0 32 ............................ ATACCCAGGACCCACAGGGCCAGGCAGGCGAC 26052 28 100.0 34 ............................ TCCGGGGGTCATCCGAGACCGCAGCAGCCACGCC 26114 28 67.9 0 ......C..GA.AC.T..G.TA...... | ========== ====== ====== ====== ============================ ================================== ================== 40 28 99.2 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAG # Left flank : GCCGCCTGCAGGGTTTCCTGGACTCGGGCTGGCTGAAAGGAGTCAAGGACCATGTCCGCGTGACCGACATTGCCGAGGTTCCGCGTGGTGTCGCCCACCGTACCGTTCAGCGCCGGCAGTTCAAGACCAGCGCGGAGCGGCTGCGCAGGCGGCGCATGCGGCGCAAGGGCGAAACCCCCGAGCAAGCGGCACGGGCGATCCCGGATACGGTGGAGCGGCGTCCCACCCTGCCGTATGCGCGCCTGCGCAGCCGCAGCACCGGCCAGCCTTTCTGCCTCTTCATCGCACTCGGTCCGCTCGCCTCGGTAGCCACCACCGGCCGGTTCAACAGTCATGGCCTGAGCGCCGCCGCGACCATCCCCTGGTTCTGACCCTTTTTGCGGAGGGTCTGCGAGATCTTTGAAAATCAATGGCTTGGGATCGCCGTCCTCAAAAGGGGCGGCGAGTCACTTGGGATAGAAATCTCTTTCGCTAAAGGAGCTTAGGAGCAAATTACTCTT # Right flank : GCCCCACTTCCAGGGATCGCCCGCGCGTGATCGGGCCAGATCAGACTTTTCCTACACGCCATGCCGGCACTGCCCTACTGTGGCTTGCGGGATGCGGCGACACACTGTGCGGGCCCCGGCGGCACGGTCATGCGAAATGCAGGGAGAGCTGCTCCGCAAGGGAAAACTGGCCGCCATCTGAGCACATGGGGGATGCCGGGCCGGGGCACATTCTTCGATTCCTCACGCAGGGCGGCGCGGCCGCGTGCGGTGCGTGCGGTCGGCAAGGCGCGTGGGCCTGTGGGGTCAGGCGGCCAGGGTGCGTTCGTAGGCTTGCAGGTGGCACCAGGCGGCGGCGAGGCGTGGGGCGTCGGTGCCGGTAGCGCGCACGCGCTCGAGCATGTCGCCGACGATGTGCGCGGCTTCCACGCGGCGGCCGGCTTCGAGGTCGTGCAGCATCGAGGCCTTCATCGGCGAGCCGGGCTCGGTGAGCTGGCGCAGTGCGGTCTGCTGGGCGGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132846-130045 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAN01000005.1 Luteimonas huabeiensis HB2 HB2_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 132845 31 100.0 33 ............................... CCCAGAATAGGTTCTGGCGGCTCAGCCAGGGCA 132781 31 100.0 34 ............................... CGCCGGTCAACCGATCAAGGCTCGGGTGAAGCTC 132716 31 100.0 37 ............................... AGTCAGTGGGATCGCGCCATGCGCGAGATCCCGCTCG 132648 31 100.0 34 ............................... GTACTCTTCCATCACGACCGCGCGCAGCTGGCCG 132583 31 100.0 35 ............................... ATGTTGCATGCGCCGTCCACCGTCGCGGCCGGAAA 132517 31 100.0 34 ............................... ACCACCTTCCACGGCGGGATCACCTTGCGTAGAT 132452 31 100.0 34 ............................... GCGACCCGCATCGGCTGCTCGACGTACTCGACGG 132387 31 100.0 36 ............................... ATTACCTACCCGGCCGCGCTCTTGGCCATCGTGGCA 132320 31 100.0 34 ............................... ACCGAGACGTTGGTGAGCGGGAGGTCGAACACCT 132255 31 100.0 34 ............................... CACGCGTTGAGCGCGGACTCGCGCGTCCTCGACG 132190 31 100.0 34 ............................... AGGATGTCGCCGAGCTTGTCCTGCTCGACCCCAA 132125 31 100.0 36 ............................... AGCGCTACGCCGGTCAACAACCACCCCTGGAAGCAC 132058 31 100.0 36 ............................... GACCTGGACCCGTGCGCGGCGCCGGAGCCGAGGCCG 131991 31 100.0 37 ............................... ATATTTGATTCTTAAAGACTTGGGGGGGCGCGCTAAG 131923 31 100.0 35 ............................... GGAGGAAGTACGCCAAGGCCCTGCACGCACTGGGA 131857 31 100.0 34 ............................... CTCCGCTGCGTGCCATCAGGCGCGATGTACGTGG 131792 31 100.0 33 ............................... AGGTGCTGCTTGGCGACCCTCCCATGACGAGTC 131728 31 100.0 35 ............................... GATGCTGGTCGTACTGGTGCCGCGGCTTCCATTCC 131662 31 100.0 36 ............................... GGATTCATTCGCGCGACCTGAAGCTGTCGCAGCATG 131595 31 100.0 35 ............................... ATCCGCTCGCCGCGCCAGGACTCGCTCTGGGCAAG 131529 31 100.0 35 ............................... TACGACGAGTGGGCGGCGACCGATCAGCGCGAGTA 131463 31 96.8 36 ........G...................... ATCGTCCAGATTCCCGGAATCCGCGAGCCCTACAGC 131396 31 100.0 33 ............................... AAACTGGAACAGTGCCCTGAGTGTGGCTGGCAC 131332 31 96.8 34 ......................A........ GCGGCGGCGAAGCGCCAGGCGAGGTGCTGGCGCT 131267 31 100.0 36 ............................... TGCTCGGCGGAGAAGCGGAATCCCTGTCGCGTCAGC 131200 31 100.0 34 ............................... TTGTAGGCGCACGCCAGGGCGATCACCTGGTCTG 131135 31 100.0 36 ............................... TCTGCGGAGCGCGATCCGGGAAGCGCCCGCCCCCAG 131068 31 100.0 35 ............................... GACCGCACCAAGGCCCTCGACCCGCTGTTCGGCGG 131002 31 100.0 37 ............................... GGCAGGGCGATGTTCTGGACTACGACGCAGGGAGGCT 130934 31 100.0 33 ............................... CGGGGACGACGATAGCGCTCCCAATTCGGAGGA 130870 31 96.8 36 .................A............. CTGCTGTCCTGGTGGAACGCCAACGAATGCGGCGGG 130803 31 100.0 34 ............................... CTCTTGGGCCTCTCGCTGTGCGCGGTCGTTGCTG 130738 31 96.8 35 ...................A........... GCATCCACGGCGCGCACGCCGCCGTCGGGCATCAC 130672 31 100.0 36 ............................... GCGTTCGTCGACGAGTATGTCGACCGGAAAAGTCGG 130605 31 100.0 34 ............................... TTGAGGTATGCCGTCCATCCGGACTTGTCGTACT 130540 31 100.0 36 ............................... TCTAGCTCGCCGCCCGCGATGCTGTCCGCGTTGCTC 130473 31 100.0 34 ............................... TGGTAACTATCCCTGCGCGCTCCGAGTTGCGAGA 130408 31 100.0 35 ............................... AAGCCGATCAACGCGAAGGCCAGCACCCAGGACGG 130342 31 93.5 34 ......T.............G.......... TCGTCGGTCTCCTCGGTGAATACCGGGGCGACTT 130277 31 100.0 36 ............................... CCGACGACAGTATTTTAGGGTCGTGGGATTGGGCAC 130210 31 100.0 36 ............................... AAGCAGACGCCGGGCCTGCGCTGCCGCGTCGTGCAA 130143 31 90.3 36 ..........G.....TA............. GACTTCTGCGGCGTAATGTGGCGGGCCTCGACATAT 130076 31 80.6 0 ........T..A.......A...C..C.G.. | A [130054] ========== ====== ====== ====== =============================== ===================================== ================== 43 31 98.9 35 GTCGCGCCCTCGCGGGCGCGTGGATTGCAAC # Left flank : ACCCCCCATTCCTCTGGAAATAGGGGGCACCGGCATGATGATCCTGGTCAGCTACGACGTCAGCACCGTATCCCCCGGCGGAAGCGCCCGGCTGCGCAAGGTCGCCAAGGCCTGCCGGGACCTCGGACAGCGCGTGCAATACTCCGTCTTCGAGATCGAAGTCGATCCCGCCCAATGGGCGGTGCTTCGCCAGCGCCTGTGCGACCTCATCGACCCCAGCGTCGACAGCCTGCGCTTCTATCATCTCGGCTCGAGCTGGCACGGCCGGATCGAGCACGTCGGCAGCAAGCCAGCCGTAGACTTCCACGGCCCGTTGATCTACTGACGCGAACCCCAAGCGGCCGGCAAACCCCCAGCAGGTTCGCGCTTTTGCAAGCCGTTGTTTTTCATACCTCTCCGCACCTTCGCCCGCTCTCGGCCCGCCGATTGCCGGGGAACAAGTTCGTTTCGCGCAAGCTGCTTCCGCGCGCCTTCCCATTCAGTGATTTACGATTGGGGCG # Right flank : ACGGTTCCTGGGACTGCCCCACGCAAGCACCTGCGGAGCCTGGATTCAAGGAAGGTGCGGATACCCATAGCGACGCAGCCTTCTACAATGCGCATCCACCCCGCACCGGACCGGACGCCTTGAAGATCGCCAGCTGGAACGTCAACTCGCTCAACGTGCGCCTACCGCACCTGCTGCAATGGCTGGGCGAGGCGCAGCCGGACGTGGTGGGGCTGCAGGAGACCAAGCTGGAAGACCCGCGCTTCCCGCTGGCCGCGCTGGAGGCGCTGGGCTACGGCTGCGCGTTCCACGGGCAGAAGACCTACAACGGGGTCGCGATCCTGGCCCGCGGGCGGGCGATCGAGGCGGTGCAGCTGGGCATCCCGGGGTTCGAGGACGACCAGCGGCGGGCGATCGCGGCCACCATCGGCGACGTGCGGGTGATCAACCTGTACGTGGTCAACGGCCAGGACCTGGGCACCGAAAAGTACGCCTACAAGCTGCGCTGGCTGGAGGCGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCGCGGGCGCGTGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //