Array 1 109538-108102 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNQ01000002.1 Salmonella enterica strain BCW_4929 NODE_2_length_556113_cov_4.09148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109537 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 109476 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 109415 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 109354 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 109293 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 109232 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 109171 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 109110 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 109049 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 108988 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 108927 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 108866 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 108804 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 108742 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 108681 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 108620 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 108559 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 108498 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 108437 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 108375 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 108314 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 108253 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 108192 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108131 29 93.1 0 A..............A............. | A [108104] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126834-125708 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNQ01000002.1 Salmonella enterica strain BCW_4929 NODE_2_length_556113_cov_4.09148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126833 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 126772 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 126711 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 126650 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 126589 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 126528 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 126467 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 126406 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 126345 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 126284 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 126223 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 126162 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 126101 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 126040 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 125979 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 125918 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 125857 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 125796 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 125735 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //