Array 1 6047-6450 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHW01000161.1 Paenibacillus elgii B69 Contig161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 6047 30 70.0 37 .CCGAATTTT.................... TAGGCAGCCTGGCTCGCTAAAAACGAATCGTATATGA 6114 30 100.0 37 .............................. TCATTGACTCTGAAATCGTAGCTGCTCTCCCCACTTT 6181 30 96.7 37 ..........................G... TTTTTGTCGTTGATATGGGCATTCAACTGCGCGACGG 6248 30 96.7 39 ........T..................... TGCATTCCAAGTTTTCGGGTGATTAAAACAATTTTCAGA 6317 30 93.3 71 ........T.....A............... AACGGTTGCGTGTCAAAGGCGGTACGCATCTCAGCGGTTTAGAACACCTATGGAGGTATTCTGGATCTTGA A [6325] 6419 29 86.7 0 ....A....A..................G- | A,GA [6424,6442] Deletion [6448] ========== ====== ====== ====== ============================== ======================================================================= ================== 6 30 90.6 44 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : CTGACGGCAATCGGGCAAATCGGCTTCGGTGCGAAAAAGAGTAGTGGCAAAGGAGTATTTCGCTTAGAGCGAGTTGACGAGAGTCTTGCTTATTTGGATGAATGTAAAGATAGCAATGGTTATGCAGTTTTGTCCAACTGCGTGCCTTCCCGACATGATTCGGTGAGAGGGTATTATAAAATTGCTACGAAATACGGGAAAGTAGGGGAAAATGCCCCCGGTGGCCGCCACCCGTTCAAACGTCCGTTGCTCATGATTCAGCCGGGATCTTGTTTTTATTCGCCAAGCTTGCCTCCTTACTTTGGCACGGTGGTGAGGAATGTTTCACCGGAAAATCCAAAGGTTGTTCAGTTTTGTTTTGGTCTGACCGTTCCCATGAGGTTTCCGAAGTCAAAAGCGGGAGAGAATGGGAATGCTTTAATTTGATTTGAGTGGAGAAGGAAGTCCTCGTCCACGAAATAATATGGAGTCCGAAGGACGAGGACAGAATTAAATCGACA # Right flank : GTTGAGCTATCAATAAAAAACGCACATTCCTTCTTGAATGTACGCTTTAATGAAAACACGTATTAGAGGAATGCTATGTTCAGTCCCTTCTCATTTGTTGTTCATCTCTTGTCGAAATCATAAATCTCAGCAAGAATCAGATAAATGATTCCGGCGATTAGAGCGATTATACTGTAAGTGGTTAAATTTCCCCCAACATAATCTAACCATTGGTTGAAAGAATCTGCACCATAAACAGTGTTAGGTGATGATGTTGAATATATCGATGCAGTTAAGTATCTGACTCCTGTAAGAAAAGCAGAAATAGCTATAAGAATGACCCCAGCCGCTCTCCTGCTCATATTCATCCCTTCCTTTCCTTATTACGTAATGATACCATAATATTACCAAGAGTCTCCCTTAACGAACGAATGATACCAAATATCAAAATACGTTGATGTAACCATTGTGAAATCCCGAATCTGGTAAACCCCCGTCGTCAATGCCGGTGTGGGTAAGTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.53, 5:-1.5, 6:0.25, 7:-0.57, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2231-2531 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHW01000162.1 Paenibacillus elgii B69 Contig162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2231 30 93.3 39 ....A............A............ TGGGATTCACGGCAAGGGCAAAACAATTAGCATGGTGAA 2300 30 100.0 38 .............................. GGCAGATCGGAGATGTTGTTCGAATTGTCCGATGTCAT 2368 30 100.0 38 .............................. TTTTCTCGTCAAGTGCCGTCAGCGACTGTACAATCTCG 2436 30 96.7 36 ...........G.................. AATCGCTCGACGTCTGCGTTGCCTTCACGGCCGGGG 2502 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.0 38 GTTTTGAACGTACCTATGAGGAATTGAAAC # Left flank : TTGCGATCCCACAGGCTTGGGTAATTTCCTCGACCGTAACGTTATCGAAGCCTTTTTCTTTAAACAGCTTTATGGCATGTGTGAAAATGCGCTCTTTCAGTTCTTGCTTTCGGGATGCTCTAAGCATCGGGGAGGGTCACCGCCTTTTTTTAAAAAAAATGACTACGGTCATAAAATAACTTTGGTCATGATTTTACTCCTGTTTTTGGTATTGTTCAAGTATCAAAAAAGTTACGAAGTATTCAAAGCTTGCGGTAAGGTAGAAGTGCGAGGCATTTTTGCAATGATTGCACATTAAATTCAGGTGACTATGGGTTGGAAAAAGGTGGACAAACGCTTATAATTTAACTACGCTGCTTGTCGTCGACCCCCAATGATGCAAAAAAACCGGGGGATCGACGACAAGGATAGTTGCGTGGCAAAAGGGATTACGGTGTTTGCTGGACTCGATACGTCATTCTTGAATATGTAGAAATGGCTTATTGGCGGGGTTTTTATGG # Right flank : CCCAGCTCTTCGCTAACCATTTGGCGACGCCGCAGTCGTTTTGAACGTGCCTAAAAACGCACCCGCAAATTCACTTAAAAAAATCTCGATTTCGTTCGAATTGACATCGTAAAGCTCCCGCGAAATCCCTCATACGCAAAAGTAGTGTATTGCCGCCAATTGGCGGCTTTTTTACTGCTAGAGTCCTGGCATATGCGGAGCGAAACCGGGACATACGTACTAGGTCCGGTAGAATAGGTAGTTGTCTGTTCGTATCTTTACAAAAAAAAGGGGAACAAAAGAAGACTGCATGATATAATGACACTATTCATATCATCATTTGTTGCCCTCGCAGGGTGACAAAGCTTTGCTGACAGGAGGCGAAGGGGTGCAGATCTATTTCAGAGTCAAGACTGCCGGCAAAAGGCGTCCGGTGCTGGAGCTCATTGGGGCGTCGCTGCCTGACGATGTGCAGTGTCTGGGGGATGCGATTCGGGCGATTGTAACGGATCAAGTACAGC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 2 8814-10096 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHW01000162.1 Paenibacillus elgii B69 Contig162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8814 30 100.0 35 .............................. AATCAACAGTATCTTTCATGCCACCATCTTTAGTC 8879 30 100.0 36 .............................. ACCCCATTCGCTTCAAGAAATCGGAATACTGTCACC 8945 30 100.0 35 .............................. TTCATTCCTGTTTGCCTCCTTATATCTGCATAACT 9010 30 100.0 36 .............................. GTGGGAAATCTTCGTCTGCCGAGCGCTCAGCCTATA 9076 30 96.7 36 ...........G.................. ACTGAAACGTCCGTTGTACGGGCTTCGTGCGGGCGT 9142 30 100.0 38 .............................. ATCCATGCTAAACCCTCCATAATTTTGATAGCGGCATC 9210 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9276 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9342 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9408 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9474 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9540 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9606 30 100.0 36 .............................. CTCCCCGCATGATCAGCTTGGTAAGCCTCTCTTCCC 9672 30 100.0 36 .............................. TCGGATTTCAGTGTGATAACCTCCGCATCGGACTGA 9738 30 96.7 35 .........A.................... CCATTTGTATCTTTCCACTGGTCGACGGGTTCCGG 9803 30 96.7 35 .........A.................... TCAGCATGCTAGCAACTTCGGGCAGCGTATCATAA 9868 30 96.7 37 .........A.................... TTAGGTTCTTATGTTCACGCAGCAATTGAAGGAAAAC 9935 30 93.3 36 .....A...A.................... CAGATTCGGCACAATCCATCCAGGACGGAGCAATTG 10001 30 93.3 36 .........A................G... ATAGAATTTTCCTCATTCTTCGATGCACTCCCTGTA 10067 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 98.7 36 GTTTAGAACGTACCTATGAGGAATTGAAAC # Left flank : AGCGGAAATTATGTCCAAGCTGCTGCTGCTGGCAGAGGACAGCAAAATTAAAGATCCAAGCATCCTGGCGATGCTATAGCATACACAAGAGCGCCCGACAAACGAGGGCGCTCTTTGTGCATACGGGAGAGTAATGATCAGAGAGTTCACTCCAGTTACACACGACTCGTTTTCCTTACCTTTGCATCGATTGTCAAATTGTCGAGGATCAAAAAAGATGCGAATTAGTTTGGAGATTTGTGGTAAGGTAGAAGTGCTAGGGTTTTTCCAATGATTGTTTATGGGAAACTGGTCTGTTGTTGTGATCATCTCGGCCTTGGAAAAAGGTGGACGAAGGCTTATAATTTAATTGTGCAATTTGTCGTCGACCCCCAATAGTGCAAAAATACCGGGGGATCGACGACAACGATAGTGGCGTGGCAGAAGGGATTACGATATTTGCTGTGGTCGATTGTAATTCTGGGATATGTAGAAATGGCTTAACGGCGGGATTTTGATGG # Right flank : CAAGGGCTCCGGTACGATTTTCGGTTATATGGTGAGCATGGTGAGAATTTGCATAACAGGCCCCTTTAAATCAGCGGTACAAAAAAGCCTCTCGAGATCGTCTCGAGAGGCTTTGCGGCGATTAGAACGTAATCGAATGTCTGCGGTCTTGGATACTTTCGCCGGAACGCGTTCGTTCGACATAGTGAAGCTTATTGTCCGTCATCAATAAAATTGTAGAGCTTCTCGTACCGTAATGATCGCTACGAATGTAGATCGGAGAGAGGAGACGCTCCCACTGCAGCGGCACGCCGGTGGCAGGCAGCGCATCGTCCGGTGCCGGCTCCGCGTCCTCAAGCAGTTCAAACAACGCATCGACACGGTCCTCCCGAACGTCCTCGAGCTGAGCTTCCAGCTCTTTCTTCCCTTTCGTTACCTTCGGCCAATCGGTGTCCAGCAGATGGTTGCTTAAGCCGTACACACCGGGTTGGAGCTTTCGAATCTCATGACCTATGTTCGAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 2441-3459 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFHW01000094.1 Paenibacillus elgii B69 Contig94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2441 30 100.0 37 .............................. TTTGCTCGATATTCTGTACATATGCGACCACTACACT 2508 30 100.0 37 .............................. TTTGCTCGATATTCTGTACATATGCGACCACTACACT 2575 30 100.0 37 .............................. TTTGCTCGATATTCTGTACATATGCGACCACTACACT 2642 30 100.0 37 .............................. TTTGCTCGATATTCTGTACATATGCGACCACTACACT 2709 30 100.0 37 .............................. TTTGCTCGATATTCTGTACATATGCGACCACTACACT 2776 30 100.0 37 .............................. TTTGCTCGATATTCTGTACATATGCGACCACTACACT 2843 30 100.0 37 .............................. ACAACTACGTTCTGAAGTATCTGCGCGAAAAGCATCC 2910 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 2975 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 3040 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 3105 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 3170 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 3235 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 3300 30 100.0 35 .............................. GCCATTCTCTCTCAATCCCTTCCTGTATCTGATCC 3365 30 100.0 35 .............................. AATCAATACCATATTTTGCAGCCGCTTCACCGATG 3430 30 83.3 0 .....T...G............T.C...G. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.0 36 GTTTTGAACCTACCTATGAGGAATTGAAAC # Left flank : AATTTATACTTTATTAGATTGACATGCTTATTAGGTAAGTCCTACAATTTGAACAGAGGTGAGAAGCATTTGATTCGCTCAAAATTAAAGCCAATTCTTGACCAGAGAGGAATCTCCATTCGTCAGTTAGCAAAAGATATTGACTATCGTTTCGATAGCGTGCGGGCTTTTTACAATGACCAAACAGAACGTTATCCGCGAGAGCTTTTGGATAAGCTCTGTACATATTTAGGGGTTAATATAGGAGATTTGTTAGAGTACCAAGATGATGGAGTTCAGGACCCGCCAATTGATTGATTGTTTACGATAAGGGTTAGAGATAAATATCTTCGAAATTATAATGATTGGTCGAGCATATTGTCGTCGACCCCCAATCCCGCAAAAAAGCCGGGGGATCGACGACAACATAAACCGTGTAAAATAATGAATCCTCTCGTTCCCAACGTTCACTTACGGCTTTGGCGTTTATGAAAAATACCGGTTTAACGGCATTTTTACGG # Right flank : CTGATTTCCATCAAACTCCTTTTCAAATCCTCCTCCCCCACAAACAACAAAAAACGCCGCGGCTCAGGACAAACCTGACTACCGCGGCGTTTCCCGCTACACTCCCGCTTTTTCCGCGGTCGATTTCATTCGCTGCGCGCTTTCATAAAGGATGCGCTCTTCGTCGAGCGTCAACACTTCCCGCTGCTTCATCACCAGTTTTCCGTCGATGATGACGTCCTCGACATCCCTGCTCGTCACCGATTCGACGATCATGTTGATCAAGCTGTGGGACGGCGAGATATGCGGCTGATCGATATCGATAAGAATAAGGTCCGCTTTCTTGCCGATCTCGACCGTCCCGATCTCGTGTCCTAGCAGCATGGCTCTCGCGCTGCCGATCGTGGCCATCTTGATTAATTCCTTGGCCGGGAGCACGACCGGATCGAACACCGGAAGACCCCAAGACATGTGGATGCCCGAGCGGAATACCCGCATTTCGTCGAAAAGGCTCAGATTCG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:-3, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //