Array 1 447675-448243 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059959.1 Pectobacterium brasiliense strain IPO:4062 NAK:237 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 447675 28 96.4 32 ...................A........ CCAAAAGCGAGAATGACGCGATAGCCGCGCCG 447735 28 100.0 32 ............................ TTTCAGCTTGATAGCCGATGCGGTGTGAAAAA 447795 28 100.0 32 ............................ AGCCATGCTTCCACTTCGTCGGCGTTCCATGC 447855 28 100.0 32 ............................ ACATTACTGCGGTGCCTCTGGCCAGTCGATTT 447915 28 100.0 33 ............................ TGATCCAGCCCTCATTTGCAGGTGGCGAGGTAT 447976 28 100.0 32 ............................ ATCCGGTCACAGTTGCTGGCCGTTGCACTGAT 448036 28 100.0 32 ............................ GTGCTGAAAATTGGGTGTTCATACCGGAGTTC 448096 28 100.0 32 ............................ GCACTTCCTGCGCGAAATCTGCCTGAATCGTT 448156 28 100.0 32 ............................ ACACCTGAGCGATCGTTAAATCTTTTATTCTT 448216 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTTGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGTACCTCCTCCTTAATAAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAATGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 455395-454587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059959.1 Pectobacterium brasiliense strain IPO:4062 NAK:237 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 455394 28 96.4 32 ...........G................ TGCGGCTCTACCGCGCCGGTCTTGGCTACCCC 455334 28 96.4 32 ...........G................ ACGCCGCACAGCCTCCTACAGCCGCTCAACAG 455274 28 96.4 32 ...........G................ GCGCAATTAGTTAAAGTATTCGGCGGCAGCAC 455214 28 96.4 32 ...........G................ TACGATTCTGTTAACCAATTCACGCGCATCAC 455154 28 100.0 32 ............................ TCCCATGCTGGGATATATTTAACGATGGCCTT 455094 28 100.0 32 ............................ CATGCAGCGAGTTAACCGCACGCACATACTCA 455034 28 100.0 32 ............................ TTTCATCAGATTGTTATAGAATGTAGCCCTTC 454974 28 100.0 32 ............................ GTTAAAAACCAGTGGGGAGAAGTAAATTTTCA 454914 28 100.0 32 ............................ TGAACATCTGCGCCCATTGTGAACATTGCGGC 454854 28 100.0 32 ............................ AATTACAGATGCAGTTTGAGTATTAGCAACCT 454794 28 100.0 32 ............................ TGCCCAGCATCAGAAGCAATACGGCTAATCGC 454734 28 100.0 32 ............................ GCTGGTCGCCGTCGGGTGCAGTTCGCAAAAGC 454674 28 100.0 32 ............................ TTCCCAGCCGACACTATCGCAGTGCAGCCGGA 454614 28 82.1 0 .............C..........TCCC | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGTAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGATTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGGTTTTAAGTCCCATTGTCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCACCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAATAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCACAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 464339-465146 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059959.1 Pectobacterium brasiliense strain IPO:4062 NAK:237 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 464339 28 100.0 32 ............................ TTCTCAAGTTCTGTTATTGTGCAAAGGGTCGA 464399 28 100.0 32 ............................ AGAATATCGGGGCGCTGCTCGCGTAAGGACTG 464459 28 100.0 32 ............................ AGCGTAATACAGCTTGCTTTGATGGCATCCCA 464519 28 100.0 32 ............................ ACTGCGCCTCGGAAAAGTTATCTGGGGCGGTT 464579 28 100.0 32 ............................ AAAGAACGTTGGAATCGAGTTTTGACCAATGA 464639 28 100.0 32 ............................ AACCAAATGTTGGTGGCTCATCAGTGTTCCAT 464699 28 100.0 32 ............................ AGTGGCGAAAATCGCAGCTGCTGGTAAACAGT 464759 28 100.0 32 ............................ ATCCCACGCTGTCGCAATACAGCCGGAGTTGT 464819 28 100.0 32 ............................ AGCTTGACCGACACCACCACGGTGGCGGTATC 464879 28 100.0 32 ............................ GGCGTCTCCATCCAGTTTTGTAATGCCGCTTG 464939 28 100.0 32 ............................ GTGAAAATCGGCACATACAACAAAGGCAACGT 464999 28 96.4 32 ...........C................ ATCACTGCGTAATAAATCTTATATGCTCTGAT 465059 28 96.4 32 ...........C................ TGTCGATTACATCGAGAAGGTTCGCAAGGACA 465119 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGTCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGTTTTTTCGCAATAAAATGAATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAAAGGAACA # Right flank : ATGTTCGAACCGAGGCCCATACCAGTAATCAGCATTCACCGTGGGTAGGCCGCGCATCAATTACTGACGTTTAAGAGTGTAGACATCAACTACCGATGTTCAGCTCTTTGATTTTACGCCAAAGGGTTGTTGGGCTTATACCAAGAATGACGGAAGCTTTCGCTCGATCGCCGTTAGTGTTTTTCATAACGCTATCGATAAGAATCCTTTCCTGTTTTTTCAACAAATCAGTCTCATCTCCCTCGAATTTCATCCCTGAACTGCAAACCAAATTTTTAGTATGAGCAGAATCTATTTTACCGATTGATATAAGGCTATTCTTATCAACGACATCGATATCAAGCAAAACAACCAATCTATGTATGATGGCTTGTAACTCACGCACATTCCCAGGCCATGGGTAGCTATTTAGAAAATCCACAGCATCATTCGTAAATATTAATTTTTTACCGTGGCGAGTTAGGAGATCGTGAATAATTAACATCACATCACCAGAACGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //