Array 1 413764-414655 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJX01000002.1 Parabacteroides distasonis strain An199 An199_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 413764 47 93.6 30 ...........T...T..................T............ ATCAATTTTCAATTACCTATGTCTAATATC 413841 47 100.0 30 ............................................... AAAAACTGTATTACTTTTGCCCCTGTGAGA 413918 47 100.0 30 ............................................... TTTGTATTCTTTTTTTGATCTTGGCTGTCG 413995 47 100.0 29 ............................................... GGCAAGATATCGAACTGTACAAACGTGGT 414071 47 100.0 30 ............................................... CTTGTGAAAATATACAGTAAGGTGGAACGT 414148 47 100.0 30 ............................................... TCCGCTGAATAAAAGGCATTGACTACCGTT 414225 47 100.0 30 ............................................... GAAAAAGACGAAATATATCTGTAGCTGTGG 414302 47 100.0 30 ............................................... AGTTGTCCGGCTACGGAGTTCGCCGAGTTC 414379 47 100.0 29 ............................................... CAACTTTGCAAAGAAATTTTACCACGAGT 414455 47 100.0 30 ............................................... GAATTACCATGTGATGGATCGTGGCATGTG 414532 47 100.0 30 ............................................... AAAACAGGAACGGCAAACGATCAGCTAGCT 414609 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACATC # Left flank : AAGCACCTCATTTATCAGCTCATCCTGTTTATCATATAGCCATTCGTTTTCCTTGGTCGAGAAATGGCTACAGACCCATAACGCTTGATAACTAACGGCATCATCCGGATCGAATATCAGATCGTATAGCTCTGCTTTCCGTTCTTGGTTCCCTTGTACATAAAATAATATCTCATGGATATCCTCTATATGACAGCGGCTTGATAGTCTCTCTTTTAGGTCCATTCTCAATCTTTGTTGTTGTCTCTTTATCTTTTCTGCCGTAAAGTTATAGTCTTTTTAGCAAAGTTTCCCTAGTTCGCTTACTTTTGTGCCCCATTGATAAAAGAATGGATAGATATGCGATATATGAATTTATTAAATGATTTAACAATTGATTGTAAAAATAACGGAGGGTGTTACCGAGTAAAGGATCAGTTGAAGAAGGTTAAGTATTTATTAAAATAGTATCTTTGCTCCACAAGAAACAGTCTTAGGGCGAATGGTGACGGTTGGCTTGT # Right flank : CGCAATCTGTATTATATGCTGTATATCAACTAGATGATAGAATGGTTAGAAAATAAAAAAGAAAAGTTTCCAATGTAATAAATCCCGTTTTATGACGGGATTTATTATTTCTAGAAGAGCTCTAATTGTTGACCGGGCGTATTAGGAGGTTGTACTTTTTTCCCATAGAACAACTCAATATTTCCAAATTGTTTGTCTGTAATGCACATTATTCCTATTTGCCCGTGTTCTGGTAAAAATGATTTTACTCGTTTTATGTGTACTTCTGCATTTTCTTGGCTGGCGCAATGTCGCACATAAATAGAGAACTGAAACATGGTAAAGCCATCACGCTGCAGATTCTTACGGAAATCACTATAAGCTTTCTTTTCTTTTTTTGTTTCCGTAGGCAAGTCAAATAATACCAACACCCACATAATACGATATTCGCTAAATCGATCCATGATTATTACCGTTCTGGATACACGATTCTTCGTTGCTCTCCACTGAAACATTTGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATCCATTGGAAACATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 53588-54217 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJX01000014.1 Parabacteroides distasonis strain An199 An199_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53588 35 77.8 30 AACA.T.........-.G........T......... GGAATCCAAGCACGATATGTAGTCATTTAC T,T [53593,53596] 53655 36 100.0 30 .................................... GCCGTCAACGTGGGCCATACCCTGACCTCG 53721 36 100.0 30 .................................... GGCATTCTAAGAATCCTTTCAGCGTGATCA 53787 36 100.0 29 .................................... GCCCGTTGTAGTACGGCCTGTACTTTTCC 53852 36 97.2 30 ..........................T......... TTACCGTTAATATAAAGATAGCTAAATCCA 53918 36 97.2 30 ..........................T......... GAAAATCCGGAGTATCATTTATATTGAGGC 53984 36 97.2 30 ..........................T......... AACTTGGCATTAATATTACATTTATCCCAT 54050 36 97.2 30 ............................A....... CTTCTTTTTCGAGAATAATAGACCACTCGA 54116 36 97.2 30 ............................A....... ATGGACGAAGAGGTTGGTATCCTTGATGAT 54182 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.1 30 GTTGTATTAGCCTTTAGTTTGAAAGGCAGAAACAAC # Left flank : ACAAGGAGAAGATATCAAGATAAAAGACTACGGAAAGTTATTTTATATACATCATGATACAAGAATCAGCTCTTTGAATAAAGTATTAAGTAAAGTCAAAAGAAACAATAGTATATCTTCTAGCGTAAAGATACAACCTTATGAAAATTATAAAAGAGAATGCCTAGATTTCGAAGAAGCCCAGATACAAATCATACCTATCATTCATTCTTTCGAAATCGCTATGGTATCGATGTTCCCAGATTTAAAGAAGGCTACTCCCGGAAATTATTATGATTTTAATGAGCTAATTACAGAATATGAGAAACGAACTAAACAAAAGATAGATAGTTCTTTTCTCATTAAAACTCGGAATATGTTCTTACATGATAAATACGAAGCTGAATGTATCAAAGAGATTTCTGACGATTTCGTATATGCAAAAAAGATTATAGCAGAATTTAAAATGAAGATAGAAAATATAAAATTAGAAGACTTTTCGAATGACTCATCAGCATAAA # Right flank : CACAGGCATGGCTATCCGAAAATAATTTGGATTCATCAAGAACTTATTCTATCTTTACAAAAAGATTAGATATCAAATATATCGAGGCCATGCGAGATATTTGAAAAAGATAAACTTCATTGAAGGAAAAGCCCGCAAAGTAGGATCATGGCCGGTCTGAAATGCGGGCTTTGTTGTTTATGGAACTAAAAGAATTTATTAAATCCGCTATAACCCAGCTTTCGGAAGCTGTTTATGAATTAGATGATGAATTGAAAGATAAAGGAGTAGTGGTAAATCCATGCTATGCAGAGAATACAAACTTTGAGACGATAGACAATAGTGAAGGTGTTATTGTTTCATCAGTAGAGTTTGATCTACAAGTCAGCACCTCTGAAATAAAGGAAAATAGCGGAAAGATCGGTGTATTAGCCAGTGTAGTAGGTATAGGCGCTTCAACCAAAGAAGGAAGCAATGGAAATGAGGCGAACCGAATAAGGTTCAAGTTACCTGTTGTTTTG # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATTAGCCTTTAGTTTGAAAGGCAGAAACAAC # Alternate repeat : GTTGTATTAGCCTTTAGTTTGAAAGGTAGAAACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //