Array 1 6674-5314 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOSW01000003.1 Listeria monocytogenes strain NRRL B-33345 AF844_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6673 36 100.0 30 .................................... ACGTATTTTGAAATCTGGATGGCATTTTCA 6607 36 100.0 30 .................................... TCCGCTTAGCCGATGAAATTCCAAGCAATA 6541 36 100.0 30 .................................... TTTATTCACCGGACAAGAAACGACCTCGTC 6475 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 6409 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 6343 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 6277 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 6211 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 6144 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 6078 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 6012 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 5946 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 5880 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 5814 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 5748 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 5682 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5616 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5550 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5484 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5418 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5352 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5317,5320,5325] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //