Array 1 175511-174752 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMM01000013.1 Parabacteroides sp. AF17-3 AF17-3.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 175510 32 100.0 33 ................................ TCCGTCCGTTTAATCTCTAACATATCGACAACA 175445 32 100.0 33 ................................ TTGTTGACCTAGATAAAGCTGTAGAATACTATT 175380 32 100.0 35 ................................ ATTTATAAGCCGGCCAATAGTAGCATTATTTCTTA 175313 32 100.0 35 ................................ ATCAAATCTTTGTAACGCATGATCTTGTCCTTTAA 175246 32 100.0 34 ................................ TGAAAATACGGATGATTATGTGCCTAAGGGCTGG 175180 32 100.0 34 ................................ TTATCTTCCTCGGAAAGTGAATTGAGGAATGCCC 175114 32 100.0 34 ................................ CTGCAACATGCCGTCCAACGATCCAAACACTTGA 175048 32 100.0 35 ................................ GCCCATTTTCCCTAAAGCTTTCAAACGGACCATAA 174981 32 100.0 33 ................................ CCGAATTTGATGGATTCAGTTTAAATGGCCAAG 174916 32 100.0 34 ................................ TTTGTTCCATCTGTATACATGGTAATCGGCTCCT 174850 32 100.0 35 ................................ ATCTGTTATAGAATTAAGGTCGATACCCGGGAAGT 174783 32 90.6 0 ................A.G.....A....... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 99.2 34 GTCGTATCTTATAGAGGTACGTGGGTTGAAAC # Left flank : TTAGATAATTATCCAGTCTTTTTAATGAAGTGATTTTATGTATGTTCTAGTTACATATGACGTAGAAACAATGACTTCCGACGGACAGCGCAGGCTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAGAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAGCTATCGGATATCATAGATCATAAAAAAGATAGTATCCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGGGTTGAATACATAGGTGTCATCACATCTTATAATGTAGAAGACGAACTTATAATATAACTGTTCGCGAACATTAAGCATTACCCCAAAAGCCGGGGTTTTCGCATTTATTGATTATTAGTCTATTGCACATATCTATTGGCTCTATTTCATCAATAAAGAATCCAAAAAGTTTATTATCGCATAAAGATATTGGTAACAAACTGTAAATGTTTGTGTTATTTGTAATGCG # Right flank : AAACATTGATCGGGAGTTGATACACGGACATAACCGTCGCACCCGTAAAGGATGCGATGGTAGTGTTATTGTTGCAATTTCAATTCAGACACGTTTCAATCCACGCACTTATTATAACCAACTCAATCTGTAACACCTATCACACCAACAGCAACTCCTCCACCCAAGCGCCATCCAAAACCAACCCGGCATGTTCATCATAACACCTTCCATCCTCCAATATAAATATTCCGGCATACTCTCCCACAGTGCCCTGTTTACGGAACTGTTCGAAATCCCATTTTCTGACGGATACGCTATACTGTTGCAGCTTACGCAATAACCAGAATTCCGGACCAATCCGCTTCAGTTCTTCCAACAAGGTTGCGCCATCACCATAGCCGACTAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAATTGATCGGCCGCCGTAGCAAAAAGGAAATTCATTTCTCCGGCACCTTTATATAAAGAGTCTTTGATCTCTGCCTTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATCTTATAGAGGTACGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 183261-181375 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTMM01000013.1 Parabacteroides sp. AF17-3 AF17-3.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 183260 32 100.0 35 ................................ AAGTTAACGATTCCAGCGTCAGAAACCGGGCGATA 183193 32 100.0 35 ................................ TCCGGGAGGATCGGGATGGCTTAATTGCTGTAGTT 183126 32 100.0 34 ................................ AGAAAAGGATTATCCTTGTATGTTGAGATAAAAT 183060 32 100.0 34 ................................ CGGGTGTTTCCCATGCCAAAAGCCTCGATAAAAT 182994 32 100.0 35 ................................ AGGAAGAAGACAATCTAAATTTAATTCTGCGGTAG 182927 32 100.0 33 ................................ CTCTGAGATAAACTACGACATCGAAGAAATGAG 182862 32 100.0 33 ................................ TCCGGGAGGATCGGGATGGCTTAATTGCTGTAG 182797 32 100.0 35 ................................ AATACATATAACACCTTTGATCGTAAAAGGGCAGA 182730 32 100.0 35 ................................ TAACATCGATACGATACTTGTATCCATTCGGACAA 182663 32 100.0 35 ................................ AAATTGATAGTTTAGGAAACTTACTAGCAAAAGCT 182596 32 100.0 34 ................................ ATAAGCCATCCTCTGGGGCTGGGAAGTAAAATAA 182530 32 100.0 33 ................................ AGCTTAAATTTACTCTAACAGCCAAACCCAAAA 182465 32 100.0 35 ................................ AGAGAGTGTCCCTATGACTGAATTGGCAAGAAAGA 182398 32 100.0 34 ................................ ATCATAATCTGCCATCTCGTTAATAGCTTCGACA 182332 32 100.0 33 ................................ AGAAAAACAGTGGGAACTCGGTGACTGGGATAT 182267 32 100.0 34 ................................ TATTTTATCTCCTATATCCTTCTTAACATGGGAG 182201 32 100.0 34 ................................ CTCTGGGGCTGGGAAGTAAAATAAAAGCCCCCCA 182135 32 100.0 34 ................................ TATTTTGCCACATGATATACATCGGCAATAACCA 182069 32 100.0 34 ................................ GTTGTTACCGATGGATCTGGCAAATGGTCACATG 182003 32 100.0 34 ................................ TGGTTATCATACATAGTATATATGCTAGCTCGTA 181937 32 100.0 36 ................................ CATAAGACTATAACCTTAGCCTTAATAGCTCCTGAA 181869 32 100.0 35 ................................ ATCGATCTTTAGCGGTATCATAATAGGTGGGACGG 181802 32 100.0 35 ................................ CGGTGGATAACAGGATCAAGTCTGATCTTATCAAG 181735 32 100.0 32 ................................ TTTTTACGATTTACGGCTTTTATTTTGTCTAC 181671 32 100.0 35 ................................ CTGTGTATGAGGATTTTATGCAAATGGAGTTTGAA 181604 32 100.0 34 ................................ TATTTTAGCAGCCATAGAGGAAGGGGGTATCCTA 181538 32 100.0 33 ................................ ATCAAATCTTTGTAACGCATGATCTTGTCCTTT 181473 32 100.0 35 ................................ AGTTATTGAAAGGATGTGGTTAATGTTGCCGACAA 181406 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 100.0 34 GTCGCATCCTTTACGGGTGCGTGGATTGAAAC # Left flank : CTTTCAGGTCACGCTGTCCAAAAGCCTGCGAAGTCATACCACTCGTCCCCATCCGCAAAAAACCAAACAGCCAGTAAATAATATTGAATAGCATCCCTCCTACGGCAATCGCCCCGATATAAGCCGCCGATCCTAAATGACCGACAATAGCGACATCAATCAGTCCCAATAAAGGCACGGTTATATTCGAAACAATAGAAGGTATTGCTAATTGAAGAATTTTTTTGTTCATGTTATTGTATATACCAAAAGCTTATTCTTAAATTTGTAAGCAAAGTTACGGATTACTTTATATATAACATTATAACGCAACAATGTTTCAATAACAGATAAAACGCGAACCCAAAGTGGTTGTAAAAACACAGGATGTTCGCACTCCCTGTTATTCTGATATTTACAATATTATTAATAACTATACAAATACCTATTATTTGTACACTTTATTATTCGCAAAATTATATGCTGAAAATGTTATCAATAAAGCTTTCCATAAACATGGA # Right flank : TTTTAACCCATGCCTGACCATGTGTAAACTTGGTCGCATCCTTTACGGATGCGACACGTTCCTTTTTCAGAGCGTTCAAATCATCATCGTTTCAATCTACTTAGTGAGTTCGTTTCATTACTAAGAATTACTATACTAAGTATAATTATAAACAAAATACAAACGACCACAAAAAGAAAATGTCATTATTCATCAATAGACTGTTCTTATGTCATTTACCTCTACTAAATCAAATTAATTTGCCTTCCATTGTAAATTAAAGCATGAAAGCTTAGTTCATTAAAAAATAAAACATAACTTTGTGAAATAGGAATAACAGAGAAAGTATATTTCTCAAAATGTGGACACCTATATTATTATTCACAATTTGTTAACCTAAACTTATGGTATACACGAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGTTTTACCAGACCTGAAATGAAAGTCGAAAGAGTCAGCTATGATGTGATAACTCCCTCTGCTGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTTACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //