Array 1 617-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFB01000076.1 Pseudomonas aeruginosa strain Pae_CF67.06d CF67.06d_contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 616 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 556 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 496 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 436 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 376 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 316 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 256 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 196 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 136 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ATCCGGATCACCAGGGCGACAGATGGCCACCTCGTTCACTGCCGTATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110-1695 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFB01000098.1 Pseudomonas aeruginosa strain Pae_CF67.06d CF67.06d_contig_98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 170 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 230 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 290 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 351 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 411 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 471 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 531 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 591 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 651 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 711 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 772 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 832 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 892 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 952 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 1012 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 1072 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 1132 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 1192 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 1248 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 1308 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 1368 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 1428 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 1488 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 1548 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 1608 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 1668 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11919-10570 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEFB01000098.1 Pseudomonas aeruginosa strain Pae_CF67.06d CF67.06d_contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11918 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 11858 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 11798 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 11738 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 11678 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 11618 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 11558 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 11498 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 11438 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 11378 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 11318 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 11258 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 11198 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 11138 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 11078 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 11018 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 10958 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 10898 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 10838 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 10778 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 10718 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 10658 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 10597 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //