Array 1 137862-138495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDB01000001.1 Thermosipho melanesiensis strain 487 Contig_6A, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 137862 30 100.0 36 .............................. TATATCTTATTGAGGCTAAGTGGACGTGCATTTTAT 137928 30 100.0 39 .............................. ATGTTGGATTTCTTCTTTTATCAAGTGTGATAGAAATAA 137997 30 100.0 37 .............................. TAACAAAAAATGTTGTATTGGATTGACGTCGTACTAA 138064 30 100.0 39 .............................. AGACATTAACGCAAATACTGCTCTTGCCGCTCTTGCTTC 138133 30 100.0 36 .............................. TTAAGTAAGTTTTTGGATGGCAAGAGAAGTTTAAAT 138199 30 100.0 37 .............................. TGTGGATGAAAGAATTAGAATTCCCACACCATACACG 138266 30 100.0 37 .............................. TGTACGATGACTCTGGTCGGATTCTACACTCGTTTGA 138333 30 100.0 36 .............................. AAATATTGGTGGTGTTCTTCCTCAAGAATTTTTGGA 138399 30 100.0 38 .............................. ACATTATTGTCATCCTCTGTAACTAGTTACAACACGCC 138467 29 83.3 0 ....-.TT........T...A......... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 GTTTCTACCTTACCTTGGAGGAATTGAAAC # Left flank : TTTAAATACTTTATAACCTCCTCAAGTTCTTTTATTTTTACATCTACTTCTTCCGGATTGTTTGAAGACACAGCGCTTTTCACACAAGTTTCTAAATGTGAGTTCAATACCTCAACATTAGCTTTTTTAAGGAGAGATATGGTGGCAAGAATTTGTTTTGAAATGTCTATACAATATCTTCCTTCTTCTATCATTTTCATAACTGCCTCAAGCTGCCCTCTGGCATTCTTTAGTGTTTTTAACGCATTTTTATGTTTCATGTCCAAACCTCCCAAAATTCTTTTACACAAATGAATTATATCATATAGTTAAATGTACTTTAACAAACCATTTTTACATATTTTCTGTCGATCTTAGATAGCACAAAAACCCCTAGGGATCGACAGAAATTTTTGTTAATTTTTATTACAACATACTCAATTTATTTACACTTTACAGATTTATATTATTAAAAGTTGCAAAAAAATATTTTTTGTAATATAATATTTATGAAAACTATG # Right flank : CATCTCTCCTTGAGGGAAATTCGTTGAGGCCCTTTGAACTTTTTACCCTACCTTGAAAGTTGAAACTTATATATCCATGTTAAAATTCCAATAGTAGATATACTTACATTAAGGAGGCATAAAAATGGACTTTTGGAAAATTGTCCTTTTCTCTGTTCTCATATTAATGCTTTCTCCTTTTCAAGTGGAGGTTTCTTCTCATGAAAAGCAAGCATGGTTGAAAAAGGTTAAGGAATACGATGGTGTTCCCTACAAATGGGGAGGAAATTCAAAAGAGGGTATAGATTGCTCAGGACTTGTAATAGAACTTTATCATGCAATTGGAATATTTCTTTTTAAATACGAGAATACTTTGTTACTAGATGTAAGTGCTGATGTGTTGTTCAAATACAATACACGTCCAATAGAATTTTCTGAGTTAGAACCTGGAGATTTGATTTTTTATGATACCGAAAACGATGGAATAATAGATCACGTAGCTATTTTTGCAAAAAAGGAAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACCTTACCTTGGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 3163-2664 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDB01000004.1 Thermosipho melanesiensis strain 487 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3162 30 100.0 37 .............................. TATTTGGTGTGTGTGTATCTATTGTTCTCAGCTGAAT 3095 30 100.0 37 .............................. AATATATATTGGATCCGCATCAAGTAGTGACTTGAAA 3028 30 100.0 38 .............................. GAATTTGCGCTTTGTCAAGATTGCTGGGAAGAATATTG 2960 30 100.0 39 .............................. AGAAACAAAACAATTAAACAAACCATCATTGTTATTTTG 2891 30 100.0 35 .............................. GCCTCTATTTGTGTTAGTTTCTGAATTGCTTTCGT 2826 30 100.0 36 .............................. TGATGGAACAGTAAGGTTTCAATTAGCCATTCCTGC 2760 30 100.0 37 .............................. TAACGGCGAAATATGGCGCTCGTTTTGAGTGCTTTTT 2693 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 100.0 37 GTTTTTACCTTACCTTGGAGGAATTGAAAT # Left flank : TTATAAACTAGAAAAACATTTTTTGGATGATGAGATTTATACATCTCTAGTTATGGAGTGGTGAATATGTTTGTAATTTTGTATTACGATGTTAATAAAAAAAGAGTTTCAAAAATGCTTAAAACGTGCAGGAAGTATCTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATTAGTATTTCTAACTTGGAGAGATTAAAAATCGAGTTGGAAAATATAATTAAAGATGAAGATTCAGTAGTGATATATACTTTCAAACAAATGTTTTACAGTAAAAGAGAAGTGTTAGGAAAAGATAAAAAAGAAGAAACAAAATTTATTTAGAAAAATCTGTCGATGTGTAATAGAAGAAAAACTCCGGGAGATCGACAGAAAACAGAATAACATTTTTGTAACTTAGGAATACATTGTGTTAATTATGTTAAATTTAATATGATATAGTTTCAAAAGTATTGCTCTTGAGAAAGAAATATGATAGAATATTAATGGATTCTATG # Right flank : GAAGTTTTAAAAAGTAAGTGTAGCTTATTAAATTTTTTAGCTTTAGAAGAAAATTGAGATATTGGGATTTGATTATTTTACAAATTTATTGATAGGGTTTCGAAGTAGAGAAATAGATATTTTGATTTCAATTGTTTTAATGAGAAAAATATATTTTTTGGGTTGATTTAAAATAATCTAGACAAAACAATGGTTATATTTTAACAAAAGATTTTAGCTTTACTGTTATTATTTTGTTTTAACTTTTGTTTTGGTTGTATTTTTAATTTATTAAAAACAAGAATAAATGTTTAAATTTAAGTTATAAGTATGATAAAATAAAAACGATCAGGTACATGTTGGAAAGGAGGAAGTTGTATGAGACAACGTATTTTGTTTAAGTTGGTAACACCAATAATTATTTTGGCATCTTTGATTATTGTAATATTTATAACTACCTACGTAATAACAACTTCTCAAAAGTTTGATGCGTTGATTGTTAATCTTGCAGGAAGACAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTACCTTACCTTGGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 22456-18575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDB01000011.1 Thermosipho melanesiensis strain 487 Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 22455 30 100.0 38 .............................. TAGTCTTGCTTCGAAAGGGCACGTCGCCGCAATAAAAA 22387 30 100.0 40 .............................. ATAATTTCAGCAAAGGGCTTTCTGTGATCAACCAAAATAA 22317 30 100.0 42 .............................. TGTTCAGATTCTTGTGCTTCTTCTTTTAATGTTTTAAATAAG 22245 30 100.0 44 .............................. TTTACCCCTACCCAAGCACCGCTTGAGGTAGGGGAATAAAACTC 22171 30 100.0 43 .............................. GTTGTAGTATTCGTAAAAATACATTGCTAAATGCTATTATATG 22098 30 100.0 34 .............................. TGCGAAGCATAAAATTTATAAAAATTTAAAATAC 22034 30 100.0 40 .............................. TGTGTTTCAGTAAATACCAAATATCTTGCATGTTTTGTTT 21964 30 100.0 40 .............................. TGACAATATAAAACAAATCGTAACTGTCACCGAAATCCCC 21894 30 100.0 40 .............................. TAAACTTTACTTCTAACAAAATCCTCATAATTAAAAAATA 21824 30 100.0 40 .............................. AACATAATACCCCACCTCCTCATGTAAATCAATTATTTCT 21754 30 100.0 40 .............................. ATACAAGTCAACAACTGTTAATTTTTCTACAATATAATCC 21684 30 100.0 40 .............................. TACACGACAGGCCATGGCACCTTCCCGCCGCTTCCTGGTT 21614 30 100.0 40 .............................. GGGGGTTCGATTATAGCCCCTTTTTTGACAATATAAAACA 21544 30 100.0 44 .............................. ATAAACTTTACTTCTAACAAAATCCTCAAAACTAAAAAATATCA 21470 30 100.0 42 .............................. CTGCAAGCTTTTCAAGTGCGACATTCAAAATTGTGTCTAATG 21398 30 100.0 36 .............................. GGTCCCCTATTATTGCGAGGACTAGCAGTTTAATAT 21332 30 100.0 41 .............................. CAGGGTCACACCCCGAGTGACCCTGCAAATTTTCTTAATTC 21261 30 100.0 35 .............................. AAGTCAATACTGCTCTGCCATGACCGCTATCATCG 21196 30 100.0 40 .............................. AAGGATTTCAACAATTCTATATCAATCCTCTTGAAATACA 21126 30 100.0 41 .............................. CCATTTGGAAGGTCAGATTGACCTTCCCGTTTTGCAAGGTT 21055 30 100.0 37 .............................. ACGTCTCGCCAATTTTATCGCCAGTTTCTGGATCAAT 20988 30 100.0 43 .............................. TCAATATCATGCAAGTCCACCATTACTTCTTCTGATAATTCTC 20915 30 100.0 40 .............................. CACCCCCGCCAAAAATTTTTGTTTCAACCTCCATGCTTTC 20845 30 100.0 43 .............................. GTATTTGTCCATATCCAGAACCCACACAATTATAAAATATATA 20772 30 100.0 46 .............................. TAGTTACACCATTACCTGATAAATTGCCAATGTTAGGGGTTTTTAA 20696 30 100.0 39 .............................. CCTCTAAAATACTTAGAAACAAATGCGCCTAAAATGTTC 20627 30 100.0 39 .............................. AAGAAATTTCAATACAATCACCCAGTCTTTGCACTTGAA 20558 30 100.0 41 .............................. TATTGGTAATGCACCATCTGATTTCGCATATATTGTATATG 20487 30 100.0 36 .............................. CAAGATATCGTTCCCAAACTTGTGTGTTGATGGGTA 20421 30 100.0 37 .............................. CGGTATATGGCGTTACGATTCCGGTTTGTATTGCTTC 20354 30 100.0 40 .............................. TTCTCGCAACCCTTTCAACACCTTCTTTTCTTGTTTTGTC 20284 30 100.0 43 .............................. TTAAATTGTCGCTCAAACGATACTCTTGAACCTCAAAAATACC 20211 30 100.0 42 .............................. CAACCTCTTCGATGCTACGTTTTAATTCTTCTACATGATCCT 20139 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 20070 30 100.0 43 .............................. GTTTGTTTCATCATCGTTCCATATTTCAATTGGTAATTGTTTT 19997 30 100.0 40 .............................. GAAACGATTCCATTGTTAAGTAAAAAAAGAAGAGGACTTT 19927 30 100.0 41 .............................. TTTGTTTTTGGTTGCCTGAATCATACCTGATAATTTTTTGT 19856 30 100.0 38 .............................. GCGACATTGGTAAGTTATACACCAAGCGCGCTAAAAAA 19788 30 100.0 42 .............................. AGATTTTAGTTGATGTACTCTCTTGACAATGCGTTCAAATAG 19716 30 100.0 41 .............................. GCAGTTTTTTCAGCATCCCAGCCATTAGTCCAAAATTCGTC 19645 30 100.0 37 .............................. ATTAAATCTTCATAAAGTCCTATTCCATAATACTTTT 19578 30 100.0 47 .............................. TTGAATTCTGTGATGGATAAAATTTATAAAAATTTAAAATACATTTT 19501 30 100.0 40 .............................. CTATCAATCTTCCTGAAATATATATTTACATATTCACCAA 19431 30 100.0 37 .............................. TAAACTTTACTCCCTTCAAAATCTTCAAAACTAAGAA 19364 30 100.0 39 .............................. CTTTTATTTGATCTAAATCTGCGTTTAGCGGTAAGTATA 19295 30 100.0 40 .............................. GTACAAGTTTGATTAGGTCTTCCTCATCCAATTTATTAAT 19225 30 100.0 37 .............................. CGACGAAAATGATTTCTCCCTCAGAGGGGGGGACTAC 19158 30 100.0 41 .............................. CTGTCCTGCACCCTATCATAAATATTCCAAATACATATTTC 19087 30 100.0 39 .............................. TTATTTATCTTACAAAACCAGGAACCCCAACAATTCGTT 19018 30 100.0 38 .............................. TTTGGCAGCCACTGTTGCCTCAGCCACCGTGGCGGCAA 18950 30 100.0 40 .............................. TAAAAATACCCGCAGGCCATTCTTCATCAAAAATAATTGA 18880 30 100.0 40 .............................. TAACTTTTTGCCACGTTTTGTTGGCAACGTTTATTGTTTC 18810 30 100.0 38 .............................. GTAATATTTGGCTTTTTCAAGTTGATCCACGATTGCGT 18742 30 100.0 38 .............................. TGAGGCCTTGTCTTGAACCATATGCTTGGATATGAGAT 18674 30 96.7 40 ........................G..... TACATTTCATATCCAGTATCGTCGCAATATTGCAATGTTA 18604 30 93.3 0 ........................G....A | ========== ====== ====== ====== ============================== =============================================== ================== 56 30 99.8 40 GTTTAGAATCTACCTATGAGGAATAGAAAT # Left flank : CATAAAAGTTTGAAAACTATCTTACTCAAAATCGATAAATCAAGTAGCTCAAAAAAAACATGGCATTGGACTTATCCAACGCCATGTTTTGTTATAATAAATAATTAATTAAATAAAATCAAATCAATTTTTCGAAATAGTATAAATTAATATTGATGTAATTCAAAAAATAATTCAAATAAGTAAATTGTAGATATAAAAAATAATCATTTTATATTTACAAAAAAGAAAAAGTGAATAAAAACACAAATAAAACCGTTACGAAATTCACGGTAATTTTTCTGTAACAACATATCGCAAAGTATCTTTAATAAATGGGTTGCAAAATGTCTTTTGTAACGTTTGTGTTAAGCAAGAAAAATAGTCCAAAAATTGAGTAGGTTTTCCGAAGCTAAAATGTGAATGAAGCCTCATGAATAAATAATTTTACAAATTAGAAACTTCCCGGAAATGCATTCGTAAAAAATAGGGTGTTATAATATTTATGGGGAAAGTGACGG # Right flank : TTTTCAATAGGGATTGAAATATATATTCAAAGAGTTACCTAACCACCCTTTTAAATTAAGGGTGGTTTTTATTTGATTACTTGACTTTTTAAGTAAGAAGAAAAAAGATAAAACAAGATGTGAAAATGTTAATTTTAAAAGGGAAAAATCATAGAGAAATACCTATTTTTGTAACAACAAAACAACGAAGTACATATATATCAAATATTTTTATTATTTTAGAAAGGTATAGGCGAAGAAGCTGTTTATCTTCAAGTTTAAAAAATAAAACTTAAAAACGGAAAAGACAACATTAAATTATGTGTAGGTTATGATATCTTAATAATTAACATTTTTTTATGGTGCTTTTAATTTAAAAAAATGTAAAGATGATATAATTTAGAAAACAAATATGGGGGGTGTCTTTTTTGAAAACAGTGGTTGTTTTAGATTATGGTTCGCAGTATACCCAGCTTATTGTAAGAAGGGTACGTGAAAAGGGGTATTATGCAGAACTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1133-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDB01000015.1 Thermosipho melanesiensis strain 487 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1132 30 100.0 40 .............................. CGCATCAAAGAATGCGAAGAAGAATTAACAAAACAAGAGA 1062 30 100.0 37 .............................. ACTTGACAATGGCGAATCATATCTGAAATCACAATCG 995 30 100.0 38 .............................. TATGAATAAACAAGAAATGATAGAACTGGTGATTTTTC 927 30 100.0 42 .............................. ACTTGCATGATATTGAATATATAGGAGTTCTCAATTCTAATG 855 30 100.0 43 .............................. AAAATACATATAGGGTAGAGGATATAGTTGCATATTTTTACAA 782 30 100.0 43 .............................. TATTTTATTCTTCCGTCAGGACATTCATTAACGTTGCCCAGTA 709 30 100.0 44 .............................. GGTAACTTTTGAGTTGCCGCGTACCACCCTTGTGGAAAACCTTG 635 30 100.0 43 .............................. GGGGAAAGCATGGAGGTTGAAACAAAAATTTTGGGGGGAGGTG 562 30 100.0 38 .............................. GAAGAAGAGGAGCGTTAGTTTTGCTCCTCTTCTTTTTT 494 30 100.0 39 .............................. GAAAATTGGTGCAGCTGGTTATGATGGCCTTGTTATGAT 425 30 100.0 41 .............................. GAAACAAACAGGGACCCCGATATATGGGAGGCTCCCTGGAA 354 30 100.0 36 .............................. TCTTTTCTCATCCTTGGGGGTGATCGCCCCCAGGGA 288 30 100.0 40 .............................. GGAGGTAAAGGAAAAATACGGAATTGGAGTTATAAATTTA 218 30 100.0 40 .............................. ATGAAGTTATTCGTCGTGCTGATTTAAGTAAATTATTTAA 148 30 100.0 42 .............................. TAAACAAATTTTTGAAAGAAGGGGGTGTGGCGGTAACTGTAG 76 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 16 30 100.0 40 GTTTCCATTCCTCATAGGTAGATTCTAAAC # Left flank : TTCCGTTATTTTGCCCTCAAATACAGATTTCTGCACCCATTTTAAGTATTTCCTTGCCGTTTTTAAAACTTTTTGTACTCTTTTTTTATTAACATCATATACCATTATTACGTACATTCCGTTCACCCCTTGTTTTTAAAAAGGTATCCCCAGCTAACGCCGGGAATACTAAATCCAAAAAAACATAAAGACAAAGTACATCAATGTATCACAATTTTCAGCCAAAAACCTGTAACATATAAAACCGAAAAATTAAACAAGCAAAGTTTCTTTTTCAAAAATCCTTATCACAAATTTGTATGCAACCTTTATCCTTTTCATTATATTTAACGAATCATATTTAAATAATCTGACATAATCCAAAAAAAGATTACAAAAAAACTGGTGAGATTTTTTCTCACCAGTTTTTCATAAAAAACAAAAAATAAAAATTTTATTCCTTAGCTTTTGTATCATATCAATACAATCTGAATTATTTAGAATTTATATTATTACCACAA # Right flank : CCCGTCACCTTTCTCATAAATATTATAACACCTTATTTTTTGCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTCATAGGTAGATTCTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 13195-12323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYDB01000015.1 Thermosipho melanesiensis strain 487 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 13194 30 100.0 41 .............................. TTCCAGGGAGCCTCCCATATATCGGGGTCCCTGTTTGTTTC 13123 30 100.0 39 .............................. ATCATAACAAGGCCATCATAACCAGCTGCACCAATTTTC 13054 30 100.0 38 .............................. AAAAAAGAAGAGGAGCAAAACTAACGCTCCTCTTCTTC 12986 30 100.0 41 .............................. AAAAGAAGAGGACTAAAAGTCCTCTTCGAAAATAATCTCTA 12915 30 100.0 41 .............................. TGGTAATAGCCACTTCCTTTTGTGCCTGGTTAATTAATTTG 12844 30 100.0 40 .............................. TCTCTTGTTTTGTTAATTCTTCTTCGCATTCTTTGATGCG 12774 30 100.0 42 .............................. ATTCTTTCATCTCCTTTAATAATTCATCTAAAAAACATAAGT 12702 30 100.0 39 .............................. CTATTTTCCTTTAAAAATCCTTTTTCTGATAAATATTTA 12633 30 100.0 37 .............................. CTGTGTGTGGACACCCTTGCTACCATCCCTGACGTGG 12566 30 100.0 39 .............................. CCGCAACCCCCCACCCACGATTTTTGTTTCTATTATTTT 12497 30 100.0 43 .............................. ACGCTATTCTCTCAGCGTATTTTTCTATTTTCTATATAAAACC 12424 30 76.7 42 ....T....A.G.TA.....AG........ TATCCATGGGAGCCTTCTTATAATTTTTTCTCTCAATCTCTT 12352 30 76.7 0 ......T....C..C..A..A.......TT | ========== ====== ====== ====== ============================== =========================================== ================== 13 30 96.4 40 GTTTAGAATCTACCTATGAGGAATGGAAAC # Left flank : AGGTGACG # Right flank : TGCTTTGTGGTACATTCATATACGAAGTTTTTTAGTTTAGGTCTTCCTAATTATTAATTATTACTCAGTATATATTAATAAACATGTATTAAAAGGATATTTAAACGGGAGATTTTGTGACAAAAAAGTTTATTAGTATTTTTGGAATAAATAATTACTAAAGAAAATAAATATAAAAAACGATATTTTTGCAAACAATAGGGAAAAGACGATAAAGTTTTAATATTCTTAACTGAGGATACAAAAAAATTAAATTGAGACAACTAATCTATAACAAACTTAGAAATTTAAATTAGAAAACTTAATGAACGGTGGAATGTTAAATAAACAGAAGAAAGAAAAAATGTTCGCGTATTCCTATTATGCTTCGTACAATAAGAAAGAATTTGTATTATGAGTAAAAGTACTGGAGCAAATAAACATGATAGTAAAATCTTTGAAAAAACATTGGAAAAAAACAATAGAAAACCAAGAGCTGTAGCAATAGATGCTGGGTATAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGAATCTACCTATGAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //