Array 1 19058-18032 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZZ01000022.1 Streptococcus equi subsp. zooepidemicus strain ISU88977 contig022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19057 36 100.0 30 .................................... GAACCATCTCGAAATCATGATAGCGTTAAA 18991 36 100.0 30 .................................... TATATGGGCTGATTATTTATATAAGGGCCA 18925 36 100.0 30 .................................... CACAGCGCTTGTCGATCAGGCCGAAATTTA 18859 36 100.0 30 .................................... CGGCGACGGAACCGAAGAAACAACAGTGGT 18793 36 100.0 30 .................................... TAGATTTTGATGTAAGTATCTTCTGCTGGC 18727 36 100.0 30 .................................... AAACTTAATAGTATCGAGAATATGCGATCA 18661 36 100.0 30 .................................... TAACATATTATCAAATTAAAAGTGCAAATT 18595 36 100.0 30 .................................... CCACGAATGCTTTAGCCGAAAAATATGCTC 18529 36 100.0 30 .................................... TAACTGTTGCGATTGGTGTCATGAAGTTGT 18463 36 100.0 30 .................................... GCACCTTTAGCCAACCTGAACCACCAGTTC 18397 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 18331 36 100.0 30 .................................... TCGTTTCACATTCAAGTAAGTGTGCCCGAT 18265 36 97.2 30 ..................T................. GGTTACTTGTTAGGGTGAGTGGATAGATCT 18199 36 97.2 30 ..................T................. GCAACTATTGTTTATTATTTAGTAATCCAT 18133 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 18067 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.6 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTAATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGAGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAAAGGGGGTTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGATAAGATACGCTTGGTGTGGTAGTTGTTGAGGAACTTCCCCTTACTTTTATCTCCTTATCTTACTATTTGCAGAAAAGTATTATAGAACGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAATGTTACGCAGCTTAACTAACTTTTTGATTGTGGCCCTGCGCTTGCCATTTTCTACCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 96910-96357 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZZ01000009.1 Streptococcus equi subsp. zooepidemicus strain ISU88977 contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 96909 26 100.0 39 .......................... TATTTGTAAATCAAGAAATTCAGCTAAGGCACGGTCTCG 96844 26 100.0 39 .......................... ATTTGTGCTATCATTATCATTATTATTATCATTGTCTCG 96779 26 100.0 41 .......................... ACGGATAAAATCGAGAAGTTTAGTCAATCCTTCACGTCTCG 96712 26 100.0 40 .......................... AAAGTATCTACACCCAACGCCTTAACATCATCTGGTCTCG 96646 26 100.0 42 .......................... TAGGATTGTGCCTTTTTTTATCAAGGGGCGATACTCGTCTCG 96578 26 100.0 40 .......................... TGTCAAGTCATAGCCACGGTTACTTGGCACTACCGTCTCG 96512 26 100.0 39 .......................... ATTATTGTTGTAGACTGTGACACCTTTTGTTTTGTCTCG 96447 26 100.0 39 .......................... TCCTCAATAATTTGGATAAGTAGCTCCGCATAGGTCTCG 96382 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ========================================== ================== 9 26 100.0 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAACTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTGTCATGTTCAAAGCAAGCATAGATAAGTTTCTTGAAATTGTCAAAATTTATGTACCTAAAAGCATTGCATTTGATGCCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAATGGGTGATTGAGATGAGGCAAGGCGTCTTGACTTAACCCAAAGAAGAGCTCCGCTTTCTTCTCCTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //