Array 1 1389952-1387978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016614.1 Mannheimia granulomatis strain P1135/26 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1389951 32 100.0 34 ................................ AGTTGGTAGATGAAAACGGCAATTTACCGTATGT 1389885 32 100.0 36 ................................ CTAATTCATACCAATTTTCAGGGTATTCAAAACTTG 1389817 32 100.0 34 ................................ ATTTCAGAAGAACAAGACGCAATGAAAACTAATT 1389751 32 100.0 35 ................................ CACGCAAAAAAAGCGAGGGTGGCGGTGGCGATGGT 1389684 32 100.0 36 ................................ AGGGTTTAGTCTTTTACCAACCATTTGATTTTCAAA 1389616 32 100.0 35 ................................ GCCATAAATCGTTTGAGGTTTAGGGTCAAAGTGTG 1389549 32 100.0 35 ................................ CTTTATTTTAATTTACCAATTCTAACTGCCTCAAC 1389482 32 100.0 35 ................................ GTTTAATTCAAAACCTTTCTGTTGGAGTTTGAGTT 1389415 32 100.0 35 ................................ TTGTGATCAGATTTTTGTTAGACCTTTTAAAGCTC 1389348 32 100.0 36 ................................ CTGACGCTGTGCTTAACAAGTTGCGTAAAACAAACA 1389280 32 100.0 35 ................................ GTTAAAGTTAATTGCAAGTCATAATTTGCTTTCTT 1389213 32 100.0 35 ................................ ACTACGTTGGGTCTTGTAGAGGGCGAATGGATTTT 1389146 32 100.0 34 ................................ CATTTAATAGAGTTAAAAAATATACAGATTATTT 1389080 32 100.0 35 ................................ ATCTAAAACAGGCTCGAATTTTTGAGAAATAAACC 1389013 32 100.0 35 ................................ ATCAAACGAGATGAACACGGTAAAGCCGATTATAC 1388946 32 100.0 34 ................................ ATTATAAACAGTATTTTGACCTAGATATGTATTG 1388880 32 100.0 34 ................................ AGATGATTGCTCACAACGTGCCTGAGGCTAAAAC 1388814 32 100.0 35 ................................ GTTGATTCACAAATTGGGTAATCAGCAAAACCAGC 1388747 32 100.0 36 ................................ TATGATACAAAGTGTTTCAAAATTCTGGTTACATAT 1388679 32 100.0 35 ................................ TTGTGATCAGATTTTTGTTAGACCTTTTAAAGCTC 1388612 32 100.0 36 ................................ CTGACGCTGTGCTTAACAAGTTGCGTAAAACAAACA 1388544 32 100.0 35 ................................ GTTAAAGTTAATTGCAAGTCATAATTTGCTTTCTT 1388477 32 100.0 35 ................................ GTGCTAAGGAATTGACAGCAGTAGCAAACGAAGTT 1388410 32 100.0 36 ................................ ATCTACTGAATATGTGTTCCACTCATCATAAAGACA 1388342 32 96.9 35 ...............................T ACGTCTCACCACTACAGATTGAGCAAGAGGGCTAT 1388275 32 96.9 35 ...............C................ CCGACTCAAGGCGATAAATTGCGTGCAGCGATTGG 1388208 32 87.5 35 ......G.....A..CA............... CACAAAAAAGGCGATACCGGCGTATCTTTAAAAGG 1388141 32 84.4 34 ..T.T.G.......AC................ AGTGTAATGGTTGTAGCAATAAATATAAAAAACG 1388075 32 90.6 34 ......G........C........A....... CTGTAGCGGACGCAGGCAGTTCAATGATTACTTT 1388009 32 90.6 0 ......G.......AC................ | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 98.2 35 GCAGCCACCTTCGCGTGGCTGTGAGTTGAAAC # Left flank : TACCGCTATGATGATGCTAATTACCTACGATATTTCGTTTGACGACCCCGAAGGTCAAAAACGCCTGCGGCACATCGCCAAACATTGCCTTGATTACGGCGTACGCGCGCAATATTCGGTGTTTGAATGCGAAGTGACGCCCGACCAATGGGTCAAACTTAAACAAAAACTGCTGGCAACTTATAACCCTGAATGTGACAGCCTGCGGTTTTATCATCTAGGCAGCAAATGGCGCAATAAAGTGGAACACCACGGCGCGAAAAGGTCTGTGGATATTTTTAAAGATACGCTGATTTTATAGTATTTTTGCGATCGCTAACGGGTGGTTCTCATTAAAATGCCGTGAGGTTAGCGATTTTTATTGTTCTTTAATAATCAAAGAGTTATAAATTTTTCGTGGCACGAAAGATATTATGCTACACTTAAATAACTCCTTAGCGTTCAGGTTGGCGAATACCAGGCTCCAAAGCCTTGTAGAATAATGCTTTGAACTATAGGGA # Right flank : TGTTCCTTTCTTTTTATTTATAAAAAAATGGACGAAACTATTTTGCATTATTTTTTGTAGCAGCTTTTAGTATGGATTTCAAGATTCGGTAAGCGGTTAAATTTTTGCAAAAGTTTGTAAATCTGTTATACTTCTCTTGAGTTGGTTAGGCAATCGCTGGTTTATTGAAGCCCTTAGTGCTGTAAAGTAAAAGCCCGAAACGGGTGATAAGTGGGACAAATAAACGAGAGGAAAGTCCGAGCTACATAGGGCAGAGTGCCAGATAACGTCTGGGAGGCGTGAGCCTACGACTAGTGCAACAGAGAGCAAACCGCCGATGTACGTAAGTGCAGGTAAGGGTGAAAGGGTGCGGTAAGAGCGCACCGCGTGGGTGGCAACATTCCACGGCACGGTAAACTCCACTCGTAGCAAGACCAAATAGGAACTCAATCGGTGGCCCGCCGAGAGTTCGGGTAGGTTGCTTGAGCGTATGTGTGAATATACGCCTAGATGAATGATTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGCGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACGTTCGCGTGGCTGTGAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //