Array 1 13818-14700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPWM010000034.1 Rothia kristinae strain GM contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 13818 28 100.0 33 ............................ CCCGGACCCGCAGCCGCAGCCCACCGAGCCCAG 13879 28 100.0 33 ............................ GTAACGCGGGACCCGGAGGCGTTGGAGGCTACC 13940 28 100.0 33 ............................ GAAGGACAACCAGATCCTGGAGATCTCCAACTT 14001 28 100.0 33 ............................ GAACGCCTGCGTGCGGGAGAGGAACGGCTTCAC 14062 28 100.0 33 ............................ CCACAAGCCACACTCGTGGCACTGGATCCGGGA 14123 28 100.0 34 ............................ GCGGGCCAGGGCCTGGACGACGTCTGCCTCCACG 14185 28 89.3 33 C..TC....................... GGTCACCCACCCGGAGCACCCCGGGCGCACCGT 14246 28 100.0 33 ............................ GGAGAGGACACATCATGAGCCCGGACCCGATCC 14307 28 100.0 33 ............................ CCGCAACGGGTGTCGTTTCGGCGGCTCCAGCGT 14368 28 100.0 33 ............................ GACCTACACGGCTTCCCCTTCCTCGCGGGAGGA 14429 28 100.0 33 ............................ GTCAGAGAAAGTCCTCACCGCCCACCAGGCGAT 14490 28 100.0 33 ............................ GCGGGTTCCGAGCATGACGGCCCGGTAGACGAT 14551 28 100.0 33 ............................ GGTCGAGGTGCCAGCTCCGCGAGGTCGGCCCAG 14612 28 100.0 33 ............................ CTCCGAGATGGCCTCCCTGCTCTTTGTGGTGGA 14673 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 15 28 99.3 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CCGGCTGCCAGGCCAATGAGGGCGATGATGACCGCCCTCCCCGCGCATGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24395-23881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPWM010000025.1 Rothia kristinae strain GM contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24394 28 96.4 33 .........A.................. GCCCGCCTTGTTCTGCTCCTCCGTGCACTTCGG 24333 28 100.0 33 ............................ GAACCACGCATGAACCCCTACCTCCAGGACCTC 24272 28 96.4 33 ......................C..... CAGCTCCACCATCACGTCCCGGATCCGCATGGG 24211 28 96.4 33 ...............A............ GTCGTGGCTCGGATGCAGTTCTCGCTCGACCGG 24150 28 96.4 33 ...T........................ AGAGATCGCTGACTCCGGCGGGAAGATGGGGTC 24089 28 100.0 33 ............................ CGTCAAGGGCGGCTGCGGGAAGTCCACCCTGGC 24028 28 85.7 33 ...........TT.GC............ CATGGACCACACCCTTCGGGTACTGTTCGAGGA 23967 28 82.1 32 .T..........T.GC...A........ TGCGTGATCCGGCAGAGCCGCAAGTCACCGGC 23907 27 75.0 0 .T.........AT.GC..A....-.... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 92.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGCCG # Right flank : CTCGCGTGAGCATCTCGAGCAGGTTGTCAGCGAGTCATACTCCCCAAGCAGCAACCGTCGCAGACCCCGCCACGGCGACATGTAAAAAATTCTCCAGATTTTTTACACGTTCAGCGGACCTGCAAACCTCTTTGACATGTCGTGAGCTCCGCCCCGGAACGCTCCCCCGAGCCCCCACCCCCGAAACACCAGCCCGCTACCATCACCCCATGTCGCACATCACCCCCACCAACGACACCACTTCCACCACCGACGCCACCCGCCCCTCCCCCGCCTTCCTGCCCGCCGCCGAGACCATCGGCCCCGAGCTGCGGGCCTTCCGCCGGGAGCTGCACCGCCAGCCGGAGCTGGGCACCCACCTGCCGTGGACGCAGCAGCGGGTGCTGGAGAAGCTGGAGGTCCTGCCCCTGGAGATCACCACGGGCCGATCCCTCACCTCCGTCACCGCGGTGCTGCGCGGGCAGGGTCGGCCCGCCGCCGCATCCGCTGACACCACCACC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //