Array 1 228985-229614 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDZ01000011.1 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 strain DSM 19682 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 228985 36 100.0 30 .................................... GGATAACCCCAAATGTTGTAAGTCACTTCT 229051 36 100.0 30 .................................... AGACTTGCTCAAACTCGTAACCATTCCCGT 229117 36 100.0 30 .................................... CTATGCTCCCCGTATTGATATAGCAGACTT 229183 36 100.0 30 .................................... ATTTAGCCCGGGTAACGCCGAAATGGTTGC 229249 36 100.0 30 .................................... TTCAATACGACAGCGAAAAATATAGACCAA 229315 36 100.0 30 .................................... TTAACACTCGCAGGTATATCGAAATCACCG 229381 36 100.0 30 .................................... TACTTGATTCAACCTGTCATAACGAAATTT 229447 36 100.0 30 .................................... AGAATTTAGCTCTTGATGACAGGACAAATT 229513 36 100.0 30 .................................... AGTTCAATATTGTACTTAATTTCATCTCGA 229579 36 75.0 0 .C............G........AC....AA.CC.A | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAAC # Left flank : TTTTACAATCCAAATTAAAAAGCAACGGTAATACAACTTGGTTGGTTCTGTACAATATTGACAGTGTAATATCAGGAGATACTCAACAATCTCTTTTTATAAAATTAAAAGAACTAATGGATGATTTCGATCTTAAGATTATTTGTTTGAGCCATAATTTGGAGAACATACCTATAGATCGAACCGATGTAGAAAAGATAGTTTTGTGTACCAAAAATTTTCATCAGTTGTTACCAATTGATGAATTAGTTAAATCTATTGAATCTAGATATCCTAATAAATTAAACATTGGGCACAATGAAATCTTGGAATCGATTGTAAGAACTGTTTCATATGTTGGAGATGAAAAAAATGTTTCTCTTGCTGGAAAAGATTTGGTAATATTGAAGATACTAAATGATATTTTGAATTATGAGACGTCATACTGTTTTGAAAATCATTTATTATCGGATGCTGAGGCCGAATTTCTACAAGATTAGACGTTAATTTTTAGATTTGAG # Right flank : AAAATACCACTCCAGTCCAAGCACAAAAGTGCAAAGACCAGAGCGGTATTTTTTATCCAAACTTATTTATATTTTTCTTCCAATCCACTCATCCAAAGTCCCAACAGGGTGCCAAGTACGAATGCGATCAAACTTAACGTAATAGTAGTACCAGTAACACCAGCATAAGAGATACTCTCAGCTGAATAGGGGTTAGGTACCAAGATCAGAATTGTACTTGCCAGCACGATTCCTAGAATAAAGTGATAAACACGTGAATGATGATTTTCAATCAAGTATTCCATCCCCTTGGAGAACAGTACCATGGCAACTATTCCACCAATAGTGATAGGCAAGAAGACGCCAACGATATCAAAGTTTTTGAATCCCGTCAGCATGGGTGTATACAATCCGAGTATCAATAACAGATTAGAAGGACTGAGTCCAGGGACCAGAACTCCCAATGCAATCAGTATTCCTGCCACAGTGAATCCTAGAAAGTTAGCGGGGATCGTTCCAAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAAGAATTTAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 275576-276205 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDZ01000002.1 Companilactobacillus nodensis DSM 19682 = JCM 14932 = NBRC 107160 strain DSM 19682 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 275576 36 100.0 30 .................................... AACAATTAAAGCACAAATGTCTACTCTTGA 275642 36 100.0 30 .................................... CCACGACAGTACAGCAAGACATCAGCCAAG 275708 36 100.0 30 .................................... GGTAAATGTTACTTCAAATGAGCTGACCCA 275774 36 100.0 30 .................................... GGTGATCAAAAGCTTGATAATGTATCTAAG 275840 36 100.0 30 .................................... GCCACCGAATACGATACTGTGTTACCTGAT 275906 36 100.0 30 .................................... ATCCTAATGAAACAGGTAACGAAGCAAAAG 275972 36 100.0 30 .................................... TAATTTAATTTCCTCCTAAAGAAAAAAGGC 276038 36 100.0 30 .................................... TATCTATTCTCGAAAGAATGGGATTAGTCA 276104 36 100.0 30 .................................... AACTATATATTTAGGATAGTTGACCACTAA 276170 36 97.2 0 ...............T.................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 GTTTTAGAAGTACGTCATTTCATGTAGTTAAGAACC # Left flank : AGTTTTGAACTTAACTCAACTGGTAATTTGAAATTAGTTCTTCAAAAAATCGTCTCGGATAACCAAATTATTAATCACGACCGAATCGAAAAACTTAATCACGAATTAAATGAACTTATATTTGATTCAATAAGTAGTTATGATGAGACTTTTGAATATGATTTATTACCCGAATTAATAAAATTATTAAAATCCAAAGATTTTAAGATAGATAGTAGTAACTGGCAGAATTATTATGATAAACTTCAGTCAGTAGTTAGATTTTATGTAGAATTCAGTGATAAGAGATTATTACTGTTTCATGGGTTAGAACGCCTATGTAGTTTGGAACAACTTAATGAATTGAATGATTACTTAAAATCCATCAAGTTAGCTATAGTAAGTTTCGAATCATATCCAATGACATTGAAAAAGTCCGGCTTGAACACCCGAATTTATTCGATTGATGAGGATCATGTTCGATTTGACTATTAACACTTAAAGTTAACGTTAAGTAGGTG # Right flank : CTAAAAGCCATCCAACACAAAAGTTGAATGGCTTTTTTCATCCCCAAACACAAAAAAAGCCCAACCAAAAATCGGTCAGGCATCCCTATTAAAAAATTTACATATCAACCTTAATAACATCTTCAACACTATCATCAAAATCAATAATCATGTTAGCAACCTCTTCAGGTCTCTCGATCATTCCGACATGACCTGCACCCTTCAAGTCTTTAATCGTAAGATGTGGCACACGTCCGATGGTTGCTTTGGCGTCTTTAATACCAGCCTCAGTTAGAATCTGATCATCGTCAGAGAAGATAGCTAGTGTAGCAAATCCTGTCGCACGAAGACGTTTGTTCATAGCTTTGTCTTCCAAATAATCATCTGCCATTTTACTTAACTTCTTGGCAGTCTTACGATCAACAGCATTCGCAGCATCATTGATAACGTTAGGGTTCTTCAGCTTCGAAGTATCGAAGTTCTTGGCAAAATACAAGCTAGACTTAACTGGTGACTTAGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTCATTTCATGTAGTTAAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //