Array 1 60747-60047 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIHJD010000011.1 Escherichia coli strain R1241 contig00011, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     60746	    29	 100.0	    32	.............................	GTCAGGGTTACCGGGTTTCTGACATTGCTGAT	
     60685	    29	 100.0	    32	.............................	CCAGGGTACTCCAGGTCACTGAAGATACGCCC	
     60624	    29	 100.0	    32	.............................	AACAGCGCCTGCTCCTGCTGCTTGAATGGCAC	
     60563	    29	  96.6	    32	............................A	CGTTTCTGAGCGCGTGCCGCTTTCTTCGTAGC	
     60502	    29	 100.0	    32	.............................	GGCTGGACGCTTGGTTCAATCGACCTAACGTG	
     60441	    29	  96.6	    32	............T................	CCGCCGCAACAATCGCGCCCGCAGTGCTGCCC	
     60380	    29	  96.6	    32	.T...........................	ATTGTTCAGAATCGTCAGCGTCAGGCAGATAA	
     60319	    29	  96.6	    32	.T...........................	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA	
     60258	    29	  96.6	    32	.T...........................	TTCAGTGAGCCATAAAACCGCAGCTTATTTGC	
     60197	    29	  93.1	    32	.T.......A...................	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA	
     60136	    29	 100.0	    32	.............................	GGCGCACTGGATGCGATGATGGATATCACTGA	
     60075	    28	  75.9	     0	..A........C..T....T-.G.....C	|                               	C [60050]
==========	======	======	======	=============================	================================	==================
        12	    29	  96.0	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT

# Questionable array : NO	 Score: 5.75
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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