Array 1 275534-278023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029554.1 Chromobacterium phragmitis strain IIBBL 274-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 275534 30 100.0 36 .............................. AATCAGTTGGGCGTCAAGCGCATTACCGGACTGGGT 275600 30 100.0 38 .............................. GGCACGTCCAAGCTGTCCACCCTGGAAGGAGGAGGTGT 275668 30 100.0 36 .............................. GGACAAGGCATGCAGAATGCACAGCTGAATAACAGT 275734 30 100.0 37 .............................. TGTGGATAACATGGGGATGGCGGGTGGCTTTTAGCGT 275801 30 100.0 36 .............................. GTCCATGTCGTAATCGACATGAGCATAATCGTGGGT 275867 30 100.0 36 .............................. TGCCGGCAATGCAGCGTTAGCAGCGGCAATTTTTGT 275933 30 100.0 35 .............................. GGCGCCGCCGCGGTGAGCCCGCCCAGGATCCGCGT 275998 30 100.0 38 .............................. AGCAACATCCCGCATGTAATTGACCAATCGACCAACGT 276066 30 100.0 37 .............................. TTTCATCAACGTGTTGGCTAACGACATGTTGGCTGGT 276133 30 100.0 38 .............................. GATTTAGTCCATCATTCAAACGTAGCAGGACGAAACGT 276201 30 100.0 36 .............................. TGCACCGAACAGCTCAAGCGAGACATGGCTGTAGGT 276267 30 100.0 36 .............................. CTGCTGTCGCAGAACTGGACGCACCTTGGCACCTGT 276333 30 100.0 38 .............................. TCAGCGTATTACATCTATCACGGCATGTATGCCAAGGT 276401 30 100.0 34 .............................. TAACCCATACTCGCCCGCCGCCCGGCGGGCGCGT 276465 30 100.0 36 .............................. ATTGCGACTGCTGTGGCGCCGGCTGGTCAGAGGGGT 276531 30 100.0 35 .............................. GCCGCCATCATCGACAGGCTGATGAAGAAGGACGT 276596 30 100.0 35 .............................. ACCATTTCTGTGGATAACATGGGGTAGACGGGCGT 276661 30 100.0 37 .............................. TCTGGACTGGGTGAAGTTTGGACCAAGTAACCTCGGT 276728 30 100.0 37 .............................. CGTTCTGCCTACTGGGTATTCTCAGCCTGTTGGCAGT 276795 30 100.0 38 .............................. TGACATAGCCCAGCGCACCGCAAGGGCGCGGTAGGTGT 276863 30 100.0 36 .............................. CGATCAGCCCTGTCCGGGTTATCACGCTCTTGCGGT 276929 30 96.7 37 ..............A............... TTCCGCGGCATCCACCACCACGTGGGTGGCGGTTAGT 276996 30 100.0 35 .............................. ACCAAGGCTGCACCGCCTGTGCCGGTGTTAGTCGT 277061 30 100.0 38 .............................. CGCACGGTACACCGCCTTTCGACACCGGGTAGACGCGT 277129 30 100.0 35 .............................. CATTACTCATGGTCTTTCTGGCCATCGGCCTCGGT 277194 30 100.0 39 .............................. GACTTGCCCGGCGCCCGTGTCCTCAGCGTCGAAGAGGGT 277263 30 100.0 38 .............................. CCCTTCGTTCATCAGCCTTGCTGCTTCTGCTTTCGCGT 277331 30 100.0 36 .............................. GTTGCTTGGGGTTGTGCCATTTTCTCCGTCTCGGGT 277397 30 100.0 35 .............................. GATCCTGATCGCCCGGTCGTGGAATCGGTTCCGGT 277462 30 100.0 34 .............................. TTCTCGAAGAAGGTCATCAGTGTCGCCTGCGGGT 277526 30 100.0 37 .............................. GATCAGCATGCCAAACCAGGCACTCGTCACCGCATGT 277593 30 100.0 38 .............................. AATAGCACTCCCAACGGTTAGAGCTAAGCGAGCAGGGT 277661 30 100.0 37 .............................. TGTTAAAAGGGTAGCGAATGGATAAGCTGCAAGCCGT 277728 30 100.0 36 .............................. GTACCAAATTCGGTATCCAGCATGTCTACAGGCGGT 277794 30 100.0 37 .............................. GCCGGAATGCGTAAGACATTTTGTGGCCACAGGCGGT 277861 30 100.0 37 .............................. GAGTCTGCAGTGGACGAGAGCTACAACGGTGCCGCGT 277928 30 100.0 36 .............................. CTCAACTGGACGCCGGCCGGCCGCGTCATCAAGCGT 277994 30 96.7 0 ...........T.................. | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 99.8 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : ATAGGAGGACAAGACGATGATGGTGCTGGTCAGTTACGACGTCCGCACTCAAGACAAGGACGGCGCCGCCCGGTTGCGCAAGGTGGCGAAGGCCTGCCGCGACTTTGGCCAGCGGGCCCAGTACTCGGTATTCGAAATCGAGCTGGAGCCGGCGCGATGGGTGCTGTTGCGCGACAAGTTGTGCTCGCTGATCGATCCCAAGCAAGATAGCCTGCGCTTCTATTATCTGGGCAGCAACTGGAAGCAGAAAGTCGAACATGTCGGCGCCAAGCCCGTGTTGGACCTGCAAGGCCCCTTGGTTTTATGATCGCGGTCGCCCGGCGCGAACCGCAAGCGGCTGCCGAAACCCTGGGAGGTTCGCGCAGGCAGGAAGGCCTTGCGCCGTCTGCTTCTCGTTCGTCAAGCCTGGCAAACTCGATTCTTGAAGTCGTCAGACAGGGGCGGGTTCGCGTTTTTCTGGCGAAAAATATTTTATAAACAAGCCGTTTGAAGCACCCAGT # Right flank : CTTCTCGACATGGATATAGACCGATGCGACCTCGGCGAGCCTATGTCCATTCCGGCCGGCTTGCGTTCAGCGCGGAATCACCATCGGCGTATGGCTGACCGGGTCTTCGATGATCAGGCAGGGCAGGCCGAACACCTGCTCGATCAGCTCGGCGCTGACGATGCGCGACGGCGCGCCTTCGGCGACGATGCGGCCGTCCTTCATCGCTATCAAGTGGGTGGCGTAGCGGCAGGCGTGGTTGATGTCGTGCAGCACCGCCACCAGCGTGCGGCCACCGTCGCGGTTCAGCCGGCGGAACAGCTCCAGCAGCTCGATCTGGTGGGCGATGTCCAGATAGGTGGTGGGTTCGTCCAGCAGCAGCAGCGGCGTCTGCTGGGCCAGGGCCATCGCCACCCAGGCGCGCTGGCGCTGGCCGCCTGACAGCTCGTCTACCAGCCGGTCGGCCAGCTCGGCGGTGCCGGTTGCTTTTAGCGCTTCATTGACCGCGTTTTCGTCTTCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4155515-4158720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029554.1 Chromobacterium phragmitis strain IIBBL 274-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4155515 29 100.0 32 ............................. CCGGATGGGAAGCGCTCAATTCCGCGCACAAC 4155576 29 100.0 32 ............................. TGGTCCACCGGCGACGGGCCGGGATGTCGGGA 4155637 29 100.0 32 ............................. ATGGACGACTACCACTGCATACGAGTGGCTCA 4155698 29 100.0 32 ............................. CCATGGCGGAACCAGCAGCCGTGAAACCGGCA 4155759 29 100.0 32 ............................. CGACAGGCTGCGAATGTGATTTATCGGGACTA 4155820 29 100.0 32 ............................. CCAATGCCCGCAGCGATTGGGACCGCGATTTC 4155881 29 100.0 32 ............................. ACCTCCAGCCCGACCGAACCAGCTGCCTGAAG 4155942 29 100.0 32 ............................. AGGTGATCTACGTCGGCCCGGATCCGCCGGAG 4156003 29 100.0 32 ............................. ACCACGGTTTTGCCGGCTCCTGTGGCGGCAAC 4156064 29 100.0 33 ............................. TAGGCTAGCCGGATTGCTAGCGCCTCGTTTTTG 4156126 29 100.0 32 ............................. GTGTCGAGCAGAAAGCTCTGCGCGCGCTTCAG 4156187 29 100.0 32 ............................. ACTGAGGCGCTAGCCATGTGCGCCACGCGCGA 4156248 29 100.0 32 ............................. GAAGCCCCGGCCCAGCCGGGGTTTTGCACATC 4156309 29 100.0 32 ............................. GCCGCCGAGGCAGCGCGCCTGGCAATTCTCGG 4156370 29 100.0 32 ............................. GCATGGGTGAGCTGGACAAAGCCATCCGCGGC 4156431 29 100.0 33 ............................. GACACGGGACAGTTCCTGTGCCCATTGGATGGT 4156493 29 100.0 32 ............................. GCCGCCAACGTGGGCGGCCTTTTCTTGGTCGT 4156554 29 100.0 32 ............................. ACGACATGCGCTTGTATTCGCTAATCGTCGGC 4156615 29 96.6 32 ............................C TTGGCGCAAATGCCCCGCATGTTGCCGCCTTC 4156676 29 100.0 32 ............................. CGGAGCGCGCTTGCGCCTTTGTCGAGCAGCTG 4156737 29 100.0 32 ............................. GACAAAGCGGCCTAACCATGAACTTCGCGCCC 4156798 29 100.0 32 ............................. CCGAGAACAACGCCCTGAAAGAACACCTGGAG 4156859 29 100.0 33 ............................. GGTATCTGCTGGGCTTCAGCGCCTGGCTGCCGG 4156921 29 100.0 32 ............................. CAATTTATGGCAAAATGCGCCTATGGCAACAT 4156982 29 96.6 32 ............................T CACCAGCAGTCGCGCGCGCAACTGGATCTATC 4157043 29 100.0 32 ............................. CATGTCCGGGCGTTCTAGAACTCAACCGATTA 4157104 29 100.0 33 ............................. GACTTGAGAGCAATTACGCAGTTGCAAAACTGC 4157166 29 100.0 32 ............................. CGCAAAAGAAATTAGTAATCGAATAGTCGCGA 4157227 29 100.0 32 ............................. TCTGGTGTCGGCCTGGGCATCTGGGGCGATAT 4157288 29 100.0 32 ............................. AGCGGGAGGCTGTGATGGACGAGCTCAAACCC 4157349 29 100.0 32 ............................. TCGGACGAGCTGATTGGCCAAGCCATCGCCGC 4157410 29 100.0 32 ............................. TGGAGGTCGAGCAACTGCCGGCTCCGGTGCAG 4157471 29 100.0 32 ............................. ATGTAGATGTAGATGGACGTCCGCCCGCGCGG 4157532 29 100.0 33 ............................. TAGAGAACAACGCTGAATAGCTTCACCTGCACG 4157594 29 100.0 32 ............................. GACGGCTCTTTCTGCGACCTCGACCGGAAATA 4157655 29 100.0 32 ............................. TACCGCGAGATCAACGACAACGGAACCGGCGA 4157716 29 100.0 32 ............................. AGAAACCCCGGCAGCGCCAACTGACCGGGGTT 4157777 29 100.0 32 ............................. CCTTGCGCTTGTTCGGGTCTTTGATGTTGTGC 4157838 29 100.0 32 ............................. AGCGAGAGCTGAAATTCACCCCAAAGAGCTTC 4157899 29 100.0 32 ............................. CCTTGCCGGTGTTGATCCGCCACATGGTGGAT 4157960 29 100.0 32 ............................. ACGTTGCGAGTCAGCCGTCTAAATCTGCTCCC 4158021 29 100.0 32 ............................. GATTTCTTGGAACGGACCTCGACAATGCCGGG 4158082 29 100.0 32 ............................. CCCAGCAGGGATTAACGCGTACCCAGCGCGCT 4158143 29 96.6 32 ..............A.............. AGTTTGAAACGCTGATCGAGTTGGCCGCCGAC 4158204 29 100.0 32 ............................. ACAGTATCGAAAAACGGGATGTCCCGAAGGCG 4158265 29 100.0 32 ............................. GCCGCGCGCGATGTGGCCGTGGCCTCGCCCAC 4158326 29 100.0 32 ............................. AGGTGAAAAAGCGAGATGAACGCACTTACTAA 4158387 29 100.0 32 ............................. CCTTTGTTGACCAGGTCGAACACGATTTCGTC 4158448 29 100.0 32 ............................. TCGGCGCGGCTGCGCGCGATCTGCGATTCCGG 4158509 29 100.0 32 ............................. CGCCGGGCCGACGCGACCGTCGGCTTCACGTG 4158570 29 100.0 32 ............................. TACGGAGAGAACTATCACTCAGTCCACGATGG 4158631 29 75.9 32 ............T.........CTCTTT. ACTCCAGGGCGAGACGTCATGAAGCAGAAGCA 4158692 29 72.4 0 ............T.........CTCTTTT | ========== ====== ====== ====== ============================= ================================= ================== 53 29 98.8 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : GCCAGCGTGGTCTTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACTTGTTCTAGCGACTGCGGTCGCAGTGCTTCGGCCAGCGGTTTTTGCGGCTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCAAAGAAGCAGTATACCAGTTGGAGGCAAGCATGAAAAAAGCGCCAGCCATGCGCTTTTTTCTTGCATGTCCATGGAATAAAGGTAGGCTGTGGCATCTGGCCCTGTTGAGACAGCCCGGCGCTCAGGCACCGGGGCGAGCGGCATCCGACCCTTGTGCAAAGGACGATTTTCCAAGGCCAGGGGCTGGCTTGCCGTGCTGATTGGAACGGCGTTTTATGGCTGGAAAAATCGGTAGAATTTCAGGGTGGTTTTTTATCTTTAAAAATCAGAAGCTTGAAAATGGT # Right flank : TCCAATGGACTGAGCGGGTATTTTGACGAGCGGTCAGGACTGCCATCCATCAGTTCTTGCTGGCCATGCATCGCCGCATCCGTAAAACAAAAAAGCGCCCCGCGGGGCGCTTTTTTTCGGCACAACGATGGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCCACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGTTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGCGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4166023-4167091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029554.1 Chromobacterium phragmitis strain IIBBL 274-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4166023 29 100.0 33 ............................. GCGATCAGCCGCGGCGCGTACACCGTGGACGCC 4166085 29 100.0 33 ............................. GATATTCCCTTGAATCAACCCCTGCGTGGTGGC 4166147 29 100.0 33 ............................. GACAGTAATCTTGATAGGAACCGTCTAATCCTA 4166209 29 100.0 32 ............................. CGCCTTTTTGCACCACGGGTTGTTGCGCACCA 4166270 29 100.0 32 ............................. TCTGCGGCGACTTGCTTGGAATCTCCTGGAGC 4166331 29 100.0 32 ............................. TATCCGCATTAAACGCAATCGTCTGATCCTGA 4166392 29 100.0 32 ............................. TGTATGGCATCTAAATTAATGACAAACAATAT 4166453 29 100.0 32 ............................. GGCTTTTCATTAGTCAAGAGGTTTTAATTGAA 4166514 29 100.0 32 ............................. TGCCACTTCGCCGATGCGACCGGTGTTTTGAC 4166575 29 100.0 32 ............................. TATCCTCCGCCCTGCTGTCGCTGCCTAGCCCG 4166636 29 100.0 32 ............................. TCACCAGACTCCAATACGTTACCTAGCGGTAA 4166697 29 100.0 32 ............................. CCAGGATGATGGTATGCGGAATGGCTTGACCA 4166758 29 100.0 32 ............................. TTCCGGCTGGCGGATAGTACGTTTTACACGCC 4166819 29 100.0 32 ............................. CGCCACACTGCCCTTCGGGCATGAGTCCGGCG 4166880 29 100.0 32 ............................. CCCGCACAAGGGCGGGTCGGGGAGGTGGGGCC 4166941 29 100.0 32 ............................. CCGTCGCGCTGCTGGAGCGCCACCAGAATTGG 4167002 29 96.6 32 ............................T TCTGTCGGGGTTATGAAAAGGGCCGCGAGCAG 4167063 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : AATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCCTTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGTTGCCGCAGCTGCAATGCGCGGACCGCGCCTTTCGGCCGGCGCATGAAAAGCTGGCCACCCAGCCGCTGACCGGCTTCGCCTGGCTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGATCACCGCCAACTTCGGCGTGGCCCCCGCCGCCTACGGCGAGCGAACCCTGCCGCCGCAAAGCGCTTGGTTGGAGCTGGCCGGCCAGCCGGGACGCTTGCTGAAAGCGGGAGATTGCGCCGGGGCTTGAGTCGCGAGGATAATGCCAATGTTGTTTTCGGCCGCGAAGGGGCAGCCCATCCGGCCGGAACGGCATCCTGGCGCTGGGATTCGGGCGGCGGATTTGGCGGGGTGAAATTCGGTAGATTTTTGAGGTGGATTTTTATCTTTAAAAATCAGTAGTTTGAAATTGGT # Right flank : GCATCATTAAAAAAGCAAGTCAACGGCAGCGCTAAGTTCTCTCCGAGTGTGGAGACTCCCTCGGTAGTGACTGTGTAGATACTTCTAGCATGAAATGACATTTGATTTTTTGACTGCTAATCTGCGCGCCTGGGTCAGGTCTAGCGGGCTGACCGGTTTCTGCCGGAGGAGCGATGCAGGCGTACTGGCGGTACAGGGGCAAATCCTCGCCTCGCGACGATGCGGGCGAACGCTGGCACTTGCTGCCTTTCCACATGCTGGATGTGGCTGCCGTGATGGAGGGGCTGCTGGATCAGCGGCCGGATTGGGTGGCGTCTTGCGCCGCCAGCCAGGGCTGGCGCGCGGAGCAGTTCCGCGCCGTGGCGGTTTACTTCGCCATCTTGCATGACTTGGGCAAGTTCGCCCGCAGTTTCCAGGCCATTCTGCCGCCGGGCTCTGCCGATTTGGTGCCGGTGGCGCGCGCGCCCTTGTATACCTTGCGGCACGATACCCTTGGCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4176417-4178032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029554.1 Chromobacterium phragmitis strain IIBBL 274-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4176417 29 100.0 32 ............................. ACCTGCTCGACTTGCGCGCTGAGCGTGAGACG 4176478 29 100.0 32 ............................. CTCCGCCGGACGCTCGCTCCGGCGGGGGGCTC 4176539 29 100.0 32 ............................. AGATTTGAACATGGCGCTCGCCTCATGAGAAA 4176600 29 100.0 32 ............................. CTCCGCCGGACGCTCGCTCCGGCGGGGGGCTC 4176661 29 100.0 32 ............................. TGCAACCAGGAAAGCTTCCTCGGCGCAGTGAT 4176722 29 100.0 32 ............................. CAGGGCTGGTTTCGGTTGCCGGCTGGCCAGCC 4176783 29 96.6 32 ............................A CGACAATACGAAATTGTTTGTAGAGGTCAGCC 4176844 29 100.0 32 ............................. CTCCGCCGGGCGCTCGCTCCGGCGGGGGGCTC 4176905 29 100.0 32 ............................. AAAAGCTCGGCACACGCAGCAACGCGTCCGCA 4176966 29 100.0 32 ............................. TCAGGATTCCATCACGGTTCGCCTGGCTGTCG 4177027 29 100.0 32 ............................. GTTTCGATACTCCCAGCCCATAAAAGCCAAGG 4177088 29 100.0 32 ............................. AACTCAATGAGGTTTTGACGATCCTTGTCCGC 4177149 29 100.0 32 ............................. AGTGATAAACCAAAATCCGTCCGCTTATGATC 4177210 29 100.0 32 ............................. GCCTTGACGTGCTTTATGGCCTTGACAGTGAT 4177271 29 100.0 32 ............................. TATTATTTGCGCGGCAGAACTGTTTCCAACCC 4177332 29 100.0 32 ............................. GATTTTTATAGTGAAAACGTCAATGGAGTACC 4177393 29 96.6 32 ............................T TTACCGTTCGCCCGTTTGCCAATATACAGCGT 4177454 29 100.0 32 ............................. TCACCGATCCCGATTTGGGAACTTGTTTGGAT 4177515 29 100.0 32 ............................. CTATCTCCCTCGTCAATTTTAATACTCATCGA 4177576 29 100.0 32 ............................. AGGTGATCGAATCAGGGCCGAGCGCATGCGCC 4177637 29 100.0 32 ............................. ATTTCGCGAGTCAGCCGTCTAAATCTGCTCCC 4177698 29 100.0 32 ............................. TAACCATCCACCAGGCCGCCGAGGCCAACACG 4177759 29 100.0 33 ............................. TACAACGGAAAGCCTGATGTCTGCCATGTGTGC 4177821 29 100.0 32 ............................. CTCGGCATTACCCTTGCGACCCGCCACCGTCA 4177882 29 100.0 32 ............................. CCCGTATTGTATTTTGTATGGAAAGGCCAGCG 4177943 29 100.0 32 ............................. GTCGCCCAGGTACTGGGAATCGACCCGATGGA 4178004 29 96.6 0 .............G............... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGATGCCGGCGGTCTGGACAAGCCGGAGGCCCAAGGGGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGTTGGGCGATGCTGGTCATCGTGCTTGAAAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTCCTGGAAATCCGCGCCGGCGTTTACGTGGGGGCCTACAACCGCAAAATCCGCGACTACCTGTGGCAACAGGTGGAAGAAGGATTGGAAGACGGCAACGCGGTGATGGCCTGGCAGGCTGCTGCCGAGGCCGGCTTCGACTTCGTCACCCTTGGGGCCAACCGCCGCGTGCCGGCGGAGTTCGATGGCGCGAAATTGGTGTCTTTCCTGCCGCCTGCCGTGTCGGAAGAGGCGGGCGAATAGGGGCTGGACGAGGCTGTTTGGAAGAGAGGTTTGGCTCTTTAAAAATCGGTAGATTTTTGAGTGGTATTTTTTCTTTGTAAAATCATTGACTTGTAATTGGT # Right flank : GCCGCCGGATACGAGATTATCCTCACGGTGCAGTTGCTGTGGTTCCTGTTTGTTTGACTCATCGGTCTTGGGACGGTCTGCCTGCGCGACCGTTTTCGCCAGCCAGATGCTCCACCAGCCTCAGCGTCAGGCTTTCCCGCGCCGCATTGGCGGGCCAAACGGCGTAGACGCCTAGCGCCTCCACTTGCCATTCCGGCAGGACGGTTGCCAGCCGCCCGGCGGCGATATCCTCCTGCACCAGGAAAGCTGGCGGCGTGGCCAGGCCGCAGCCGGCGATGGCGAGCCGGCAGGCGGCATCTATGCTGTTGACTGTCAGGCGCGGTTGGAAGGCGAAGGTTTGCGCTTCATCGGGGTCCAGGCTCAGCGTTTTGCGATTGGGCCGCATGCGTATGCCCAGCCAAGGCCAGTTGGCCAGTTCCATCGGGACGCGTGGCGCTTCGCGTTCCGCCAGCAGCGAGGGCGCGGCTACGGTGAGGCGCGGCATATCGAACAGGCGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //