Array 1 49-504 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000103.1 Corynebacterium sanguinis strain 45173 NODE_13_length_509_cov_194.129630, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 49 28 100.0 33 ............................ CGACGGGCGACCAGAAATGATGCTCATCTCTGA 110 28 100.0 33 ............................ GAACGTGGACGGGCTAGAATCAGCCCTGGACGG 171 28 100.0 34 ............................ CTCTACGAGCTTCCGACATCGGCGCCCCCCACCA 233 28 100.0 33 ............................ CAGCCTCGATAGCGTCCTTAGTCGAACCGCCGA 294 28 100.0 33 ............................ GACCACTACCCATGCCCTCGGCAGAAGCCTTGA 355 28 100.0 33 ............................ CCATTGGTTCCTTGTTTTCGGGCTATTGACGGT 416 28 100.0 33 ............................ CGTGGCCGGAGCATCCGTGACTAGCTTCAGCGG 477 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : TAGCGGGGATGAGCCCAGATACCAAAAGGATAGAAACGATGAACATCAG # Right flank : CTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 566-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000099.1 Corynebacterium sanguinis strain 45173 NODE_160_length_642_cov_242.511504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 565 28 100.0 33 ............................ CTCTGCGCCGATGGACAGCTTCAGGTTCTCCGC 504 28 100.0 33 ............................ CCTCCACCGAATCCACGCCCGGCGGTTAGCACC 443 28 100.0 33 ............................ GCTGTACATCGGCAACATGGCTTCCGAGAACCC 382 28 100.0 33 ............................ CCTCCTCCGCATGGTCGGCTGCTGCGAGGAGGG 321 28 100.0 33 ............................ TCTGCCAATCCAGCGATCCGGGTTGCGCCGTCT 260 28 100.0 33 ............................ CAGGATGCAAGACCACGGAAACATCCTACCTGG 199 28 96.4 33 ..........................T. CCAGATCATCCACTACGAGTTTTAGCGTCGGGT 138 28 100.0 33 ............................ CGTATCTTCAACGCGCTCGCGCCATAAGTCAGG 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : GAAATATCGCTCGATCAGCCAACTGCGGCGCTGGTAGCCGCTTAACTATCTGTCCACGACTTGCGGGCAAGCCCAG # Right flank : CCAGATACCAAAAGGATAGAAACGATGAACATCAGTGCTCCCCGCGCTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-865 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000086.1 Corynebacterium sanguinis strain 45173 NODE_275_length_954_cov_224.819840, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45 28 100.0 33 ............................ CTGGTCAGGAAGAACCCGCCCCCAAAAACGCAC 106 28 100.0 33 ............................ CAGGTTGGAACATGTACGACTCGCGTTGCAGGG 167 28 100.0 33 ............................ CGGGTGGGAACTATCCAAGCAGGATTCGACCTA 228 28 100.0 33 ............................ CTCGATCTGCTGGAGCTGCTGTTGCTCCTGGAA 289 28 100.0 33 ............................ CCCTGACGAAGACCTACCCGAGCCAGGCACTTT 350 28 100.0 33 ............................ CTCGATGACGAGGGCGGATACGTTCGGTATTCG 411 28 100.0 33 ............................ GTCAAGGCCAAGTCCGACCAGAAGGCGGCGGAG 472 28 100.0 33 ............................ CCTGCACATCACCAGTCCACTCACCATGCGCCG 533 28 100.0 33 ............................ GTGTTTCACCCGGACGCTTCCCCGGGACGAGGT 594 28 100.0 33 ............................ GGGCGGGGAACAGAGCCGTCGCGAGCTGCGCGA 655 28 100.0 33 ............................ GCACGACGGGTTGGCGATAATGCCCTCGCGGAA 716 28 100.0 33 ............................ GTTGTACATCGGCAACATGGCTTCCGAGAACCC 777 28 100.0 33 ............................ CGTGGAGCAGGTGCTTGATGACGCGGCGTCTCG 838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : GGGGATGAGCCCGTGGCCGGAGCATCCGTGACTAGCTTCAGCGGG # Right flank : GCGGTTCGACGGTGTGGGGTTACCCTCTTTTCGTGGACACCGAACTAGCGGGGCCACCGTGCCCTGCGGAAGGATGTTCACATGGGACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3617-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000057.1 Corynebacterium sanguinis strain 45173 NODE_292_length_3665_cov_188.604794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3616 28 100.0 33 ............................ TCAGCGTTCCGCGTCGTTGGCTGCGTTGCAGGC 3555 28 100.0 33 ............................ GAAGACCACCAGCCCCGCCAAGGTTGAGGCGGA 3494 28 100.0 33 ............................ CGAACAGCTTATTCTGCTCAATCTGCTGCTCAA 3433 28 100.0 33 ............................ CTCAATAGGGAAGAGCGCTGGTGATATTTGCTG 3372 28 100.0 33 ............................ CGTCCTTGAACGTCACCAGCATGGAGTCACCAC 3311 28 100.0 33 ............................ CTGTTCTCTTTGAGGGAATCGGCGAAGTGACCC 3250 28 100.0 33 ............................ CCCAGAAGCATGAGCGATTGTCACCAGTGACAC 3189 28 100.0 33 ............................ CCGGCATTACCCGCAAGACGTGGGGGAAAGCAA 3128 28 100.0 33 ............................ CCTCCAGGCTGGCCGCTACCTGTTGCTCTACCG 3067 28 100.0 33 ............................ CCGAATTGCCACAGGACGGGCCTCTGGTTGCCC 3006 28 100.0 33 ............................ CCAGCCACGCGGGCGTTAGAACCGAATTGCCAC 2945 28 100.0 33 ............................ GGTGGGCGACAATGGGCTGTTCGGCCCCGAGTG 2884 28 100.0 33 ............................ CCGGAAGCTGCACAACCGCACCAGACGGCATCC 2823 28 100.0 33 ............................ CGCCCAGCAGCAGCTGATTAATGACCAGCAGGC 2762 28 100.0 33 ............................ CCCGACCACCTTGACGATGCTGAAGCGTAACGA 2701 28 100.0 33 ............................ CGTGGGTGCTGACTTGTGGTGGCCTGGTGATGA 2640 28 100.0 33 ............................ GCGTTCGGCATGTTGGTGAAGCAAGCCGAGAAC 2579 28 100.0 33 ............................ CGCTCGCAAGTAACGCGAATGATGCGGATGGTG 2518 28 100.0 33 ............................ CCCGTCTTTCATGCCGGAATTGGTGCTTGAAGC 2457 28 100.0 33 ............................ CAGTGCGGGGCCGAACGCGGACTGGCCCATCAG 2396 28 100.0 33 ............................ CAACCCCCACGCTCCTACCTCGATGAGCTAGAC 2335 28 100.0 33 ............................ CCGCGTCGATTTGCACATCGCCGCGCACAAAAC 2274 28 100.0 33 ............................ CCGTCGAGTCTGACGGTACCCCGATTTCCTCGC 2213 28 100.0 34 ............................ GGCATCAGCTTTGAGAATTCGGCAGTGTTCAGCC 2151 28 100.0 33 ............................ CTCGTCATTGACCGCCACAAGCTGGGACAGCAA 2090 28 100.0 33 ............................ GTGGGTGCGCTCGTTGACGTTGGATGTTGTGTG 2029 28 100.0 33 ............................ CCTCGACGTTCAGGGGAACAGCCGTCTCATTCA 1968 28 100.0 33 ............................ CTCAATCTGCTGAAGCTGCTGCGCCTCCTGGAA 1907 28 100.0 33 ............................ CGTGACCTCCTCCACCCCGTAGTGGCGGGACAG 1846 28 100.0 33 ............................ CACGTACTCGTTCTTGCCCGACAGGTTCACACC 1785 28 100.0 33 ............................ CCCTTCTTCCCCGCACGCAGGTCAGCGGCGGAG 1724 28 100.0 33 ............................ CCTAGCGCAGGACGGCTATTTAACCTGCATAAA 1663 28 100.0 33 ............................ GGTGCGTATCCAGGATGACTCCGAAAGCGAGAT 1602 28 100.0 33 ............................ CGCGCACCGCAACCACGTGCACATCGCCGCTGC 1541 28 100.0 33 ............................ CTCGGCGACATGCTCCACGTCATCTTCGAGGTA 1480 28 100.0 33 ............................ CTACCCAGAACAGCGCTATGGGTAAACCTAACC 1419 28 100.0 33 ............................ CGTATCGCCGTAGAACAGGGCGCGGAGTTGTTC 1358 28 100.0 33 ............................ CTAGCCACCCTATTAGGGCGTGGCGCAACTGGT 1297 28 100.0 33 ............................ CTTCGGACAGCATTCGGCGATCGTCGTCAGTGA 1236 28 100.0 33 ............................ CCAACGTCTCACCAAAGGCCTCAACGCCGCCCG 1175 28 100.0 33 ............................ TCAGGCACACGGATTCCTCGGTGGCGCGCTTGC 1114 28 100.0 33 ............................ CAAAATGTACTCATCGCGGAGTGCGACCTCCTC 1053 28 100.0 33 ............................ GATTTCCATGATGAAGGCGTCGCCGATGGTTTC 992 28 100.0 33 ............................ CCCTCTGGAGCGCGCCCGAAAGTCCGCTGACAA 931 28 100.0 33 ............................ CTGCTCACGGTCGGGCTCAAGGCCGCCGTCGGG 870 28 100.0 33 ............................ CCGCATTACGGGGGTGAGAATCGGGGGTACTGA 809 28 100.0 33 ............................ CTAATCCACTCCCCGTTCGGGAACAACGTCAAG 748 28 100.0 33 ............................ GCGTTTGGGCTTCTGGTGAATTCGGCGGAGCTG 687 28 100.0 33 ............................ CTTGAATACCAGCCCACACCGATTGGAATGCCG 626 28 100.0 33 ............................ CCATCCCACCCAGCAGAGAACAGCCAGCGCGCA 565 28 100.0 33 ............................ CGCCATTGAGGCCCTACGCGCCACCGTGGCCAA 504 28 100.0 33 ............................ CAACACACGACTCGGACGGGTCAAGCAGAATCG 443 28 100.0 33 ............................ CCGTCGCACGCCACGACTCCCATATCACCACGG 382 28 100.0 33 ............................ GTTAGCCCGGCTCAAACCCCGCCCCGGGCGTAT 321 28 100.0 33 ............................ CGACGACTGGGAACTCCTCGAGATTGAGGGCTA 260 28 100.0 33 ............................ CCAGTACTCCTACTCCTGGAACGACCTCGGCGA 199 28 100.0 33 ............................ CGTGAATGTGCTGCGGTCCCGGCTGCTTATTGA 138 28 100.0 33 ............................ CATCGCATAGCCCGACGAGCAGGCAGGGGAGTG 77 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 59 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : CTAGCGGGGATGAGCCCTATCAAGAAAGGACGATAAGTAATGTTCACC # Right flank : CCATTTCCGACATGGACGCGAAAGCATGGTTTACGTGCTCCCCGCGCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23398-25072 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000030.1 Corynebacterium sanguinis strain 45173 NODE_35_length_25163_cov_358.900462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23398 28 100.0 33 ............................ GGCCACCGGCACCTGGACAATGCCCGGGCCCGG 23459 28 100.0 33 ............................ CCGGCAGATCGCGGCGACGAGGTGCGCACCCTC 23520 28 100.0 33 ............................ GTGCGGTCTTCACTGCGAACGCGGATCGCAGGC 23581 28 100.0 33 ............................ CTGACGCACCTGTTCCAATCCCGCTACGTCGAC 23642 28 100.0 33 ............................ CAGGATACCCGGCGTTGAGCGTAGTGACGTGCA 23703 28 100.0 33 ............................ GTGCGGCCCGTAAAGGCGGTAACGACGTTCACG 23764 28 100.0 33 ............................ CCCATTCTCCGCAGCAGCCCGAGTTAGAGTGCC 23825 28 100.0 33 ............................ GCGGCGTTGAATCTCCAGCAGGTGCAGGCGAAT 23886 28 100.0 33 ............................ CTAATAGCGCTTTACACGGCGATTGAGCATTAC 23947 28 100.0 33 ............................ CTCCCCTGGTTGAAAGCTACGGGGGTTCATTCA 24008 28 100.0 33 ............................ CAAGCGTCGCAATATCACGGCCCACGGTCACAT 24069 28 100.0 33 ............................ CAGTGCTGGAGACTCCGGCGAAGCCCGGTGCGA 24130 28 100.0 33 ............................ CTGGGCGGCGGCGCGAAGATCGTTATAGGTTTC 24191 28 100.0 33 ............................ GTTAACGCCGTACTCGTTGATAATCTCCGGCAA 24252 28 100.0 33 ............................ CAGCCGGAAGCTGGGAGGTAGGCACAAGACCAC 24313 28 100.0 33 ............................ CAGGACACCTACACGCGCGAGCAGGTGGAGTCC 24374 28 100.0 33 ............................ CTGGGGCGCCCGAGATGATCGGTGTGACACTGC 24435 28 100.0 33 ............................ CCCGACCGCGTCAAACTCATGACGAAGCATTTC 24496 28 100.0 33 ............................ CCCACCAAACTGCGACTGCATAAGCGCCAACTG 24557 28 100.0 33 ............................ CCGCGCATGATTTTTGGAGGTAAGTAAATGGCT 24618 28 100.0 33 ............................ CACGGCGATTGCTCTGTTCGGTACCCCGTTGGA 24679 28 100.0 33 ............................ CCAACAACACAACCCGGAATCTCCCGGTAACCC 24740 28 100.0 33 ............................ CCTGCGCCTCATAGTGCGCGGGCACGGCGGGGT 24801 28 100.0 33 ............................ CCGTCGCCCCGGGGAGTGACTTGGGTGGCGCGC 24862 28 100.0 33 ............................ CACTGACCCCCACCTAGCCCTCGTGGCCGGGTG 24923 28 100.0 33 ............................ GAAAAGTTCTCGCAAAGGGGCTATGTAAAGAGC 24984 28 100.0 33 ............................ CGTGCAATGTTGCGGCTGTTGCAAATGGCTTTT 25045 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : ACGTATCAGACGCCGACCTCATCACTGACGTCGAGCTTATGCTGTGGAGCGAGCTGGAAACAATCGCTACCGGGGTGAATTGGTCTGAAGAGTCATGATGGTTCTCGTCATCACTGCATGCCCGGCCGGACTCCGAGGGGACTTGACCAAATGGCTTGCCGAGATCTCCTCGGGGGTTTTTGTGGGGCGGCCTTCGGCACGCGTGCGCGATTTGCTGTGGGAGCGCACTGAGTTGCTTGTTAAAGACGGCAGGGCGTTGATTGTCTACGCATCCGATAATGAGCAGGGGATGGAGTTTAGGACGCATCGACACGATTGGGTTCCAGAGGACTTCGATGGTCTCACGTTGATGGTTCGAAGGAAGCCACAGAGCGGAAATAGTCGGCGCACTGGGTGGAGTAACGCTAGGCGGCAGCGGAGAACTTATAAGGGGCGGTAGCGTTGCCTTGAAGTCGGGTTTAAAATGCTGTGAAGGCTCTCGTCTTTCCTGTTCAGAAAGG # Right flank : CCATTGTCGCGTTGTGGGCTTGCCCGCAAGTCGTGGACAGATAGTTAAGCGGCTACCAGCGCCGCAGTTGGCTGATCGAGCGATATTTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53682-53226 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000013.1 Corynebacterium sanguinis strain 45173 NODE_401_length_53779_cov_354.134539, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 53681 28 100.0 34 ............................ CCACCGACTGCGAAAACTCCACGTATCCCTCCGG 53619 28 100.0 33 ............................ CACACTAGCCGACCGCCGTGACCTGGAGGGCGT 53558 28 100.0 33 ............................ GCGCCGACGCAATCCCGGACAGTTCCTTCCACT 53497 28 100.0 33 ............................ CGATGGCAGCGACTCGCCTACGATCTCGCGCTA 53436 28 100.0 33 ............................ CAAGACGGGCCTTTTCGGCGTCAAGCAAGTGTG 53375 28 100.0 33 ............................ TGTGGCCGTACACGGTTGTGCCAGCGCCGTCGG 53314 28 100.0 33 ............................ GTCTTCCGGGTCGCTGAGGGAAGCGTTGGCCGA 53253 28 75.0 0 .........T.A...T...T..AAT... | ========== ====== ====== ====== ============================ ================================== ================== 8 28 96.9 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : TGAAATATCGCTCGATCAGCCAACTGCGGCGCTGGTAGCCGCTTAACTATCTGTCCACGACTTGCGGGCAAGCCCAGTGTTCATTGGTTCAGGTGTC # Right flank : TGAGGAATACGAAAATAGAGACGCGCTGGGAGTCGTCGTCCGAGGAGAGGGAAATCCCCGGGTCGAACCTCAAAGAACAAGCTGACCAAAGGCCCACCGAAAGAAACCCTTCCTACTCCGGATCCACCGGCGGGTACTTCTTCTTCGCGGCGTCGGACAAACCCGTGGGGTTGCCGTTTTCGTCGTAGATGTAGAACCCTTGGCCGGATTCCTTGCCAATGTGCCCCCTTGTCAATGAACTCTTCCTTCAGACGCCGGCTGAATTCAATCGCGAGCGGATCGCCCGTTTCAGCCCGGTTTTTCGTGATCTGGTAGGCCGCGCCCAAACCGGTGTTGTCCTGCGCGAGGAACGGGGCGAGTTGCTTCGTTCCGGCGAGCATGGAGGCTACCTCGTCGAGGGTTTCAATGTCAGCCACACCGAGTACCCACATGTCGCGCGCCTGATCGACCCAGGTGGAGTAGAAGGAGTTGATGATGTACTTCGCGTGCTCGCGGTGCAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000098.1 Corynebacterium sanguinis strain 45173 NODE_135_length_664_cov_235.151618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 100 28 100.0 33 ............................ CGCTGAAAACCACGGCCACACAGGGCGCGGCGC 161 28 100.0 33 ............................ CTCCACAAAGGGGACAAGCACTGCACGACATGC 222 28 100.0 33 ............................ CCGGACATTTACGTGCGTTTATTGCGGGGAAAC 283 28 100.0 33 ............................ CTTCGCCTCGGCCTCGGCCACCGTCTTCGCACC 344 28 100.0 33 ............................ CCGGCGTGCCGTCAGATTCGACAGTGATACGCA 405 28 100.0 33 ............................ CGAGGCTGAAATTTACGCCGGCTGCTACGTCAA 466 28 100.0 33 ............................ GTCAGGCATTTGCGGACGGCGTGGCCGATTTCC 527 28 100.0 33 ............................ CCCCGGCAGGCGCGACTGTCACTGTCGGTTTCC 588 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : GTTGTCCCATGTGAACATCCTTCCGCAGGGCACGGTGGCCCCGCTAGTTCGGTGTCCACGAAAAGAGGGTAACCCCATTGGACGATAGCAATCATTTGGG # Right flank : CTATCAAGAAAGGACGATAAGTAATGTTCACCAGTGCTCCCCGCGCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-5206 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXIS01000047.1 Corynebacterium sanguinis strain 45173 NODE_70_length_5316_cov_197.364001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 50 28 100.0 33 ............................ GGAGGTCAAAAGTGAGTAACCTACTACTCTCAC 111 28 100.0 33 ............................ GAAGGCTTTCATTTCTGTGGTGAGGGACTGCCA 172 28 100.0 33 ............................ CTTGTCCCACCCGGCGGTGCCTACCTGGGCGCG 233 28 100.0 33 ............................ GGTTTAGAACAGTGGAGATTTAAGGGGTGGGGG 294 28 100.0 33 ............................ GAAGTCCAGGAAACGTTCTGGTCCAACCTGACC 355 28 100.0 33 ............................ CCAAACCGACCGAGGAGATAACACCGTGAGGAA 416 28 100.0 33 ............................ CCGAGGGTGTCTCGGGTGTTGGGGACGCCCTCG 477 28 100.0 33 ............................ CTTGAACGGGACCTCGGCGCCTGCGTGCTTCCA 538 28 100.0 33 ............................ CGATTCGATCTGCGCTTGGGTGAGCGGCTGTCC 599 28 100.0 33 ............................ CTCGTCCCAGGGCAGCACGCGCCCCTGGATTGT 660 28 100.0 33 ............................ CGCTTATCGTGCCCGGTGCGCGCCCTGCCGATT 721 28 100.0 33 ............................ GTCACCGGCGACGCTGGCCACCTCGTCGACGAA 782 28 100.0 33 ............................ CGCCTACTGGCGCGCAATGGCCGAGTCCTACGC 843 28 100.0 33 ............................ TGGCTGGGTTCGGCAAGGCGCTCCAGGCGAGCA 904 28 100.0 33 ............................ CCGAGACCCCCGAGACCCACGACAAGGACACAG 965 28 100.0 33 ............................ CTCGCTTCCGCGCTCGGGTTTGATGGTACATCG 1026 28 100.0 33 ............................ GCCTGGCGCTAATCAGGTGTTGCAAGACATTTC 1087 28 100.0 33 ............................ CCCGATCAACATGGTTAAGAACCTGTGGGACGG 1148 28 100.0 34 ............................ ACGCCCACGCGCACCACCAGGGAAACACAACCCA 1210 28 100.0 33 ............................ CCTGTATGCAGGCAACCCGCACAACTACGGTGG 1271 28 100.0 34 ............................ CGTGGCACTCGGCGCATTCAGCGCAATTGCTGGA 1333 28 100.0 35 ............................ CGCGGCAAGCCCGGCCCGCAAGGACCAGCGGGACC 1396 28 100.0 33 ............................ CAGTCCCCGCCGCGTCATGGCGTGGGATTCCTG 1457 28 100.0 33 ............................ GTCTGGTGAGACGGTTCAACTTGTGGGTAACAA 1518 28 100.0 33 ............................ CAAGTACGGCACTTTGGATGGTGCCGGGAAGGA 1579 28 100.0 33 ............................ CAGCCCGAGCGGGCGGCGCAGCAATACCACCGG 1640 28 100.0 33 ............................ GCGCGCGGCGCGGATGGGCTTGTTGGGTGGTGG 1701 28 100.0 33 ............................ CCGCACATCCGCCAAGCAAGCCGGAGCGCGCTT 1762 28 100.0 33 ............................ CGCAACAGCCACCACACGGCCCTCATCAGCCAG 1823 28 100.0 33 ............................ CGGTCATACGCCAGCGACAGGTCACTGTAGCTT 1884 28 100.0 33 ............................ CAAGCCCATCCGCGCCGCGCGCTTCATGATGTC 1945 28 100.0 33 ............................ GTTTCTTCTTGAGCTTTGTGTTTGGCTCGTTTG 2006 28 100.0 33 ............................ CCCCGCAATGCGGGCAGGTTCCGCAATCGTGTC 2067 28 100.0 33 ............................ CCGATCGAACTTTGCGGAGAATTCGGCGGGTGC 2128 28 100.0 33 ............................ CCCGGCCGCCGAGCCGGACTTTGAGGAGCTGAG 2189 28 100.0 33 ............................ CACCAGCCAGCGCAACATGTTCTCATTGAGCTC 2250 28 100.0 33 ............................ CGATGACCGTTTTGGTCAACGAGAGATGAGATA 2311 28 100.0 33 ............................ CTATGGACATGGGAGGGTGAACGCTTGGGCAAA 2372 28 100.0 33 ............................ CCGGCCACGGCGGCAATGACGGTTGCCACCATG 2433 28 100.0 33 ............................ GAGTACTATGACCTCGCGCATGAGTGGTGGGCG 2494 28 100.0 33 ............................ CTCAATTGCAATCGCGCCCGGATCGTCTGAAAA 2555 28 100.0 33 ............................ CGGGTAGGCGGGTGTCTTTTCTTACTAGCAACG 2616 28 100.0 33 ............................ CCAATGCTTTCGGTCAAGCGGCTACGTCGATCA 2677 28 100.0 33 ............................ CATGGACGTGCAGCGCGCCAAAGTCAACGAACT 2738 28 100.0 33 ............................ CCGTCCAGAAACGCGGGCCAGTCACGCAGCCCA 2799 28 100.0 33 ............................ GGGCACCCCGATTGAGGTGGAGGAACTCAACAC 2860 28 100.0 33 ............................ CCGCGATGAGTTGGTCTACGGCTGTTTCCACAT 2921 28 100.0 33 ............................ CCACTCGCCTAACCTGGCGCAATACGGAATTTT 2982 28 100.0 33 ............................ GTTCATCTCCCGGTAAAAGAACGGCCCGGCCGC 3043 28 100.0 33 ............................ CAACCCACTAACAACCCCCCAAAACCATGACAA 3104 28 100.0 33 ............................ CCTCACCGCCCGCATGTGGTGGCCCGGACAGGA 3165 28 100.0 33 ............................ CACGAGCGCGGAGTACATTCGCCGCAACCCCGG 3226 28 100.0 33 ............................ CCCCGGCAGCGTCAGTGGTAGCGGCTGGCGCGG 3287 28 100.0 33 ............................ CAAGCCTTATGGCCCGACGAAACTGTTAGATCA 3348 28 100.0 33 ............................ CTTATCCTTCAATGAAACAGACGACTCTGGAAC 3409 28 100.0 33 ............................ CTGGGTTCCGTCCGCCTGGACGGAGACAGGACG 3470 28 100.0 33 ............................ CGGCATGGGTGTGCCCATATACACCGGCTCGGA 3531 28 100.0 33 ............................ GTTCTACGGGTGCCACCTGTTCAAGTTGGACCG 3592 28 100.0 33 ............................ CTAAACGCGCGTTACCGCCGCTCGTCTGAAGAG 3653 28 100.0 33 ............................ CGAGGGCGCCCCGGCTGACGTGTCTACGATGGG 3714 28 100.0 33 ............................ CGAGTAGAACAACAACTCGCCGAAACCAGCCCA 3775 28 100.0 33 ............................ CGCCAGCCCGGCTCCCCAGGAAACGCGTTGTCG 3836 28 100.0 33 ............................ CTCGGCAGTGTTCAACCGGAACTTCGGCTTCTT 3897 28 100.0 33 ............................ CGATATTCTGAGTGCGTTCCTGGTTGTTCATTA 3958 28 100.0 33 ............................ CTCCAGCTCGGAGTCGGGGACGTAAACGTAGTG 4019 28 100.0 33 ............................ CCCGGCATTGTCGTATTGCGGGACGGCTGATTG 4080 28 100.0 34 ............................ CAGACGTGCAAAAACCGTGATGTAGTCCCCCGCT 4142 28 100.0 33 ............................ CTCGTCGGCTGAGGTTGTCACGGACGATTCGTG 4203 28 100.0 33 ............................ CATTGTTCAGGGCCTGATTAACGGCGTCACGTC 4264 28 100.0 33 ............................ CATCATCCAGTCGCACGGCACTGGTGCCCGGGA 4325 28 100.0 33 ............................ CAACCGTTGATGGGGTGCAGGCGGTTACCGGGC 4386 28 100.0 33 ............................ CATCACACCCCACTCAGACTCAGACAACCGGTA 4447 28 100.0 33 ............................ CACATTGCCGAGCGTGTGGTGGCGCTGAAAGTC 4508 28 100.0 33 ............................ GTCGTTGCCGGCGTCGTGTGGTGTGATACTGGC 4569 28 100.0 33 ............................ CTCGCAGAACGTTTCAGTGCCGGTGATGTGGCC 4630 28 100.0 33 ............................ CCGCGACCGGATCGTCGCTGCCTGGAACGACGG 4691 28 100.0 33 ............................ CTCGCACCAGCGGATATTCGCCATTAATAATTT 4752 28 100.0 33 ............................ GATTATGCCATGCGAGCTATGAAGACTAACTAA 4813 28 100.0 33 ............................ CTCTGCAAGTGGTCACAAATATCAATGGGTACA 4874 28 100.0 33 ............................ CAAATGGCTGAAGCTAAGAAGACCGCCAGCCCC 4935 28 100.0 33 ............................ CGTATCCGGGCGTCGGCCTCGGCGGTTGCCAGC 4996 28 100.0 33 ............................ GGATAGAAACGATGACCACCACAACTCATGACA 5057 28 100.0 33 ............................ CCCTCACGCTCGCAGCATGCTCGAGCCCTCAAG 5118 28 100.0 33 ............................ GCGGCCTCGCGAGGGGCAGCTCGGCCTATTCGA 5179 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 85 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : CTAGCGGGGATGAGCCCATTTCCGACATGGACGCGAAAGCATGGTTTACG # Right flank : CGGCGAGTGGCAACTGATCGGCGAAGGTGGCGAGTGGGGTTACCCTCTTTTCGTGGACACCGAACTAGCGGGGCCACCGTGCCCTGCGGAAGGATGTTCACATGGGACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //