Array 1 531-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOUK01000175.1 Klebsiella variicola strain HUMB 14438 NODE_5638_length_500_cov_47.062000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 530 27 93.1 31 --........................... CGGCACCTGGTCGATAAAAGGTGATGGCGAA 471 29 100.0 32 ............................. GCTCGTTGTTTTCCCGTCGAACGCGCCGGAAA 410 29 100.0 32 ............................. CGCTGCCAGTGCAGCGGGACGGGGAAGACACT 349 29 100.0 38 ............................. CGGGATCGCTGCCACCAAACGGCTGATAANNNNNNNNN 282 29 96.6 0 N............................ | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 97.9 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GCGAAGACACGCTGGCACAGATTGCCGAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCCGCGCCAGCGGGGATAAACCGGGTTGCGACATCGCGCCAGGTATTAATCACGGGTGTTCCCCGCGCCAGCGGGGATAAACC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5858-6555 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOUK01000180.1 Klebsiella variicola strain HUMB 14438 NODE_6049_length_12268_cov_94.177940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 5858 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 5919 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 5980 29 93.1 32 ............CA............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6041 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6102 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 6163 26 75.9 35 ............CA........GA..--- ACTACTAACAATATTTAACGAACGCCAACACACAC 6224 29 79.3 32 CG..AA......CA............... TGAGGCTGCTGACGGAGAAATGGGACCTGTTC 6285 29 89.7 32 ............CAC.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6346 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6406 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6467 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6528 28 82.8 0 ..........A.CA........-.....A | ========== ====== ====== ====== ============================= =================================== ================== 12 29 90.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTNNNNNNNNNNCTCCCCGCTTACATTCGCATATCGCCAGCATCC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 134269-136169 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOUK01000181.1 Klebsiella variicola strain HUMB 14438 NODE_6391_length_399510_cov_63.154385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 134269 29 100.0 32 ............................. GCGATAGAAACAGAGGGGTATTTTGGGCGCGG 134330 29 100.0 32 ............................. GCGCAGCCGCTGAAAGTATCAGGTACTAAGGC 134391 29 96.6 39 ............................N NNNNNNNNNGGCTTACCCGGGAGATCAGTAACCCGCAGT 134459 29 100.0 34 ............................. ATTATCGATTACTACCTGGACGCGTTCGGTTCAC 134522 29 100.0 32 ............................. CAGCGCCTGGGAGGGATTCCGGATCCAGGTTA 134583 29 89.7 36 ..........................NNN NNNNNNNCCTCAATCTCCCACACTCGGCATGCATAT 134648 29 100.0 32 ............................. GGTTCGGCGGCGACGCTAAATCGGCGCAGGCG 134709 29 100.0 32 ............................. CGTGGTTTTGAATGGCAAATCGTCTTCTGACG 134770 29 96.6 37 ............................N NNNNNNNNNCCCCAGTCCGGTTTGCTCATCAACTACT 134836 29 100.0 32 ............................. AAATATAATGGGAATTGCCCCGCTCCGGCGGG 134897 29 100.0 32 ............................. GTTGAACACTCAGGCGCCCTTGCCGTGAGCTC 134958 29 93.1 39 ...........................NN NNNNNNNNCCCATTACGGGAGGTGCTCTTGCCTGATAAC 135026 29 100.0 32 ............................. CTTGAGGGAGTGGATAATTGACTGCACATCCT 135087 29 100.0 32 ............................. CTCGTAGTGGTCAGGAGACAGAGTGATGGCAG 135148 29 100.0 35 ............................. NNNNNNNNNNCGAATACTCAACATCGCAATATGAC 135212 29 100.0 32 ............................. GGTTCATCAATCGCTCTCGTTCTGCCCGTTGA 135273 29 100.0 32 ............................. TAGTAGGGCGGTGAGCCGTCTTGCTGTTCGAA 135334 29 100.0 32 ............................. CATTATCGGGGCCGGTGAAATGCCGCGCCCTC 135395 29 100.0 32 ............................. TTTTTAAAAAGGCGATAGAAACAGAGGGGTAT 135456 29 93.1 39 ...........................NN NNNNNNNNCCCGCCTCAACAATCCCCAGCGCATGACCAT 135524 29 100.0 32 ............................. CGGTTATTCAGCATCATCAGGTTTACGGCCTG 135585 29 100.0 32 ............................. GTAGTGAACATCAGAGCCAATGGTGATCTGCA 135646 29 100.0 32 ............................. GTATAGAGAACGCCGCACAGCGCATTAACCGT 135707 29 96.6 35 ............................N NNNNNNNNNACGCCTCACAGATGCACAAATAAATT 135771 29 100.0 32 ............................. CATGTCAGCCCCTCAATGTTATAGCGCTGCTG 135832 29 100.0 32 ............................. GACCTCCCATGATTAACGAATATAAAACCGTG 135893 29 100.0 32 ............................. TTCAATGCGGCGATAACTTCCTTTAAATCCAC 135954 29 100.0 32 ............................. AGCTCCGCATCCGCAGCAGAAACAAATCCAGT 136015 29 89.7 36 ..........................NNN NNNNNNNGGCGACGGCTACGAGCAGGTCGCGCCGGA 136080 29 100.0 32 ............................. GTGGTACGCCAGTTGTCCCGCTCCTGCTGCGC 136141 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCTTGCGGCAGGCGAAATTCAGCCACCCCCACCACCTGAAGACGCACATCCTGTAGCTATCCCACTCCCTGTCTCTTTAGGTGATGCAGGCCATCGGAGTCGTTAACGATGAGTATGTTGGTTGTGGTGACAGAGAATGTTCCTCCGCGACTCCGTGGACGGTTAGCCGTCTGGTTGCTGGAGATTCGCGCTGGTGTGTATGTTGGGGACATCTCAACAAAGACACGAGAAATGATATGGCAACAGGTTTCCGTTCTAGCAGAAGAGGGGAATGTTGTTATGGCTTGGGCGACGAATACCGAATCCGGATTTGAGTTTCAGACATATGGTGTGAATAGACGTATTCCGGTGGATTTGGATGGACTGCGGTTAGTATCTTTCCTTCCTGTTTTAAAACAATGAGTTATATGCTCTTTAATAATGTAAAATTGTTGCTTAATTGTTGGTGAATTGTTTTTCAGTTAAAAGCTATTGATATTGAAGTCTATTTTTTTAGT # Right flank : GATCGCCGGGGCGCTCAATACCGCCGCACTGGGGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNATCGACGATGTTCTGCGTGATGGTGATGTATGCGTGTTCCCCGCATTCACGGGGATAAGCCCGCAATTAACAATCAGGCGCCATCTCATAGGCTGTTTGATGGCGCAGGATCAGCACCGCTTGCCACCAGCCCTGCGCCTGAGCTTTTTTGTGTCCTTTTGTCGGCAAAGCATTGGTAAACGCTTGGGCGGCGTCTCTATCCTCAGTTAGCGCAAAATAGGCCAGAGCTTTTGCTACTGGCCCGTGCGCATCAGGCGTCGTGCGAGCAGATTGCGTAGCCTGGCGTCGGCGCTTTCGCGCCCGGCATTTTTCGGCATATTAAGATCAGAAGGAGAAGGTGCCGGGACATATTTATCCACGAAAGCAATGAGCTCATTGACCGTTAGCACCCGTTCGGCAATGTGCGCGACATCCGGCCAGTAATTTTCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-401 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOUK01000150.1 Klebsiella variicola strain HUMB 14438 NODE_3254_length_371_cov_50.296497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1 29 100.0 32 ............................. TGTTGTTTGAAATCTGCAAGATATTCGTTTGG 62 29 100.0 34 ............................. ATTATCGATTACTACCTGGACGCGTTCGGTTCAC 125 29 100.0 32 ............................. TTCAGGAATGACTTCGTGGACTTTGAACGGAT 186 29 93.1 37 ...........................NN NNNNNNNNGAGGTTTCTTCAATGGTAGCTAAGTCGAT 252 29 100.0 32 ............................. CATTTCAATAACGCGACAGTGTTCTACTGTTA 313 29 100.0 32 ............................. AATTGGAGAGGTTTAATGTTCGGGATGCTGAC 374 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-206 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOUK01000148.1 Klebsiella variicola strain HUMB 14438 NODE_3084_length_183_cov_85.491806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================= ================== 1 23 100.0 37 ....................... CAGGTTATACTGGCAAAACGTCGATGGCTCTCGTATT 61 23 95.7 38 .......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCGGTATTC 122 23 91.3 39 ......TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATGGTATTCC 184 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ======================================= ================== 4 23 96.8 38 CCCCCGCATGCGGGGGTTATCGG # Left flank : | # Right flank : TGAGGCT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //