Array 1 405294-406041 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTK01000001.1 Pseudomonas aeruginosa strain LiA133_2003 IPC776_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 405294 28 100.0 32 ............................ ATCGCGACCGGTACAGAGCCGGACCTGTCGGC 405354 28 100.0 32 ............................ ATGAACGTACCAGACGTACGTATCAACAACGC 405414 28 100.0 32 ............................ TCGCGGGCCCGGAGAAGACCGGAATCAGCTTC 405474 28 100.0 32 ............................ TGTTCAACTGTGATCATGTCCGATTCCTGGAA 405534 28 100.0 32 ............................ GCTACAGCGCCAACCTATCAATTCCATTCTCG 405594 28 100.0 32 ............................ ATGCACTCCAGCGCGAACTGAACTGTGTAAGG 405654 28 100.0 32 ............................ TGGCGGACAACGCGAACGACGAGGGCGTGTGC 405714 28 100.0 32 ............................ AGTAGCAGGCAGGCCAGCGCGACCGAGACAAC 405774 28 100.0 32 ............................ ATACATCGGTCTGAAGATTCGCAATGTGATGC 405834 28 100.0 32 ............................ TCTCGCCTGCTGGCGCTGATCAGTTGGAAAGG 405894 28 100.0 32 ............................ AGGAAGCTTGGCGGTCACACCGACCCCCGCAT 405954 28 100.0 32 ............................ AGTACCTGCCCGAGCGATCACGCCACACGCCG 406014 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGCGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAAGTCGGCAATCAACATTCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1234-2102 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTK01000023.1 Pseudomonas aeruginosa strain LiA133_2003 IPC776_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1234 28 100.0 32 ............................ GTGGTGGTCCGTGCCGGTTTGCGTGCCCAGCG 1294 28 100.0 32 ............................ TATGTCCGCAGAAAAGCCGCGGGAGCGGCCAM 1354 28 100.0 32 ............................ CTGCGAATACCCCGCCGCGGCTGATCGTTTCC 1414 28 100.0 32 ............................ TACAGCTTCGAGGCTTCGGCGACCGCTTCCGA 1474 28 100.0 32 ............................ ATCAGGCCGACGCCCTGCTCAGGAGTGGCCAC 1534 28 100.0 32 ............................ GTTCACCACCGGACTGCCGCCTGGGTTCAGCG 1594 28 100.0 32 ............................ AAAAGGACAACTTCCTCTCGCTGACGCAACTG 1654 28 100.0 32 ............................ GTCCAACCCAGTCGTCTGTGACGCACCTACGC 1714 28 100.0 32 ............................ TCTGACTTGGATGTTGTGGCCCAGCCACTGCC 1774 28 100.0 32 ............................ TCTATATGGCGCTGGGTTCCGTTGCGGCCATG 1834 28 100.0 32 ............................ ATCAGCCAGAGGCTGTCCGATTTCGGGAAGGT 1894 28 100.0 32 ............................ CGGAGGTCGGACATCATCGGACGCTTGTTCGG 1954 28 100.0 32 ............................ GTGCCGAGTGCCCGCGGTCGAGGTGCCGGCCT 2014 28 100.0 33 ............................ ATTCTGGACACCACTGAATTACTGCGGTGCCCT 2075 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11858-10630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTK01000023.1 Pseudomonas aeruginosa strain LiA133_2003 IPC776_23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11857 28 100.0 32 ............................ ATTCCCGCGTAGTCGGGTCCGTCGTGGCTGTC 11797 28 100.0 32 ............................ AGTTCGAGTGGACCGTCGGGGGCCTGGAGCTG 11737 28 100.0 32 ............................ AAACCAGTCCGCCGATGAAGGGGCGAACAAGA 11677 28 100.0 32 ............................ TGCTGAATGCGGTGGCCGAGTGCTGGCCGTGC 11617 28 100.0 32 ............................ TATTGCAGCATCCACCACGTGGACGGAAGAAC 11557 28 100.0 32 ............................ AGGCACGGTGAACATCACTGGGCGGAGGTCAG 11497 28 100.0 32 ............................ TGCCACCTGAATGCGAAACTTCGTGCTGTAGC 11437 28 100.0 32 ............................ GTCACCAGTTCATCACGCACATGGGCACTGCC 11377 28 100.0 32 ............................ TGTCCGCGAAGCTCTTTCACGTCAGTAGCGCG 11317 28 100.0 32 ............................ AGTTCGGTGTTGCAGTGGTTGATAGCCGCGGA 11257 28 100.0 32 ............................ ATGCTAATAACGGTCGACTCAGCTTCTTCCGA 11197 28 100.0 32 ............................ GTGTTGAGATCATCATAGGTTAGCGTTAGAAC 11137 28 100.0 32 ............................ TTGACCGAATTGGGCGGAGCCGCGCCGCTTGG 11077 28 100.0 32 ............................ ATAACCGTGATCTTGGCGAGCGGGGTGGAGAC 11017 28 100.0 32 ............................ AGGTTCTGGACTACGTCCCAGTACGGAGCCTC 10957 28 100.0 33 ............................ CTGCTCGCTGCAGAGTGAACGTGCGTGCTGGGT 10896 28 100.0 32 ............................ AAGGGCGTGCTGCGGTGCATCCTGCCGTTCAC 10836 28 100.0 32 ............................ TAGGTCAAAGCCTGCTCGATTCTCCGCGCATC 10776 28 100.0 32 ............................ ACTGGACGGGGCACCCGTCGCGGCTGGACCGC 10716 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 10657 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCMGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //